Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_N01
(819 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 33 0.002
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 33 0.002
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 32 0.006
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 31 0.013
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 31 0.013
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.017
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.068
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.068
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.068
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.068
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.068
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 28 0.12
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.16
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.16
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 27 0.16
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 27 0.21
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 26 0.36
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 25 0.64
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 25 0.84
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 24 1.5
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 24 1.9
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 23 3.4
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 5.9
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 33.5 bits (73), Expect = 0.002
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 286
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 287 IDKRLSWNAGR 319
+D+RL++ G+
Sbjct: 62 VDRRLAFQGGK 72
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 33.5 bits (73), Expect = 0.002
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +2
Query: 113 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 277
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 278 MNWIDKRLSWNA 313
+ W L+W +
Sbjct: 88 LMWEQSHLTWKS 99
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 32.3 bits (70), Expect = 0.006
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAA-ATTXGDYALRARVSNNGSAL 452
+ RLW+PDV++ N+A G Y V NNG+ L
Sbjct: 100 IPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGTCL 137
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 31.1 bits (67), Expect = 0.013
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAA-ATTXGDYALRARVSNNGSAL 452
++ +LW+PD+++ N+A G Y V++NGS L
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCL 168
Score = 25.4 bits (53), Expect = 0.64
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +2
Query: 140 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 304
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 305 WNAGRMG 325
WN G
Sbjct: 118 WNESEYG 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 31.1 bits (67), Expect = 0.013
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAA-ATTXGDYALRARVSNNGSAL 452
++ +LW+PD+++ N+A G Y V++NGS L
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCL 168
Score = 25.4 bits (53), Expect = 0.64
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +2
Query: 140 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 304
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 305 WNAGRMG 325
WN G
Sbjct: 118 WNESEYG 124
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 30.7 bits (66), Expect = 0.017
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAA-ATTXGDYALRARVSNNGSAL 452
++ +LW+PD+++ N+A G Y V++NGS L
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGSCL 100
Score = 25.0 bits (52), Expect = 0.84
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSWNAGRMG 325
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 28.7 bits (61), Expect = 0.068
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAA-ATTXGDYALRARVSNNGSAL 452
++ +LW+PD+++ N+A G Y V+++GS L
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCL 100
Score = 25.0 bits (52), Expect = 0.84
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSWNAGRMG 325
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 28.7 bits (61), Expect = 0.068
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAA-ATTXGDYALRARVSNNGSAL 452
++ +LW+PD+++ N+A G Y V+++GS L
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCL 100
Score = 25.0 bits (52), Expect = 0.84
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSWNAGRMG 325
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 28.7 bits (61), Expect = 0.068
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAA-ATTXGDYALRARVSNNGSAL 452
++ +LW+PD+++ N+A G Y V+++GS L
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCL 100
Score = 25.0 bits (52), Expect = 0.84
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSWNAGRMG 325
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 28.7 bits (61), Expect = 0.068
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAA-ATTXGDYALRARVSNNGSAL 452
++ +LW+PD+++ N+A G Y V+++GS L
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCL 100
Score = 25.0 bits (52), Expect = 0.84
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSWNAGRMG 325
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 28.7 bits (61), Expect = 0.068
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAA-ATTXGDYALRARVSNNGSAL 452
++ +LW+PD+++ N+A G Y V+++GS L
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCL 100
Score = 25.0 bits (52), Expect = 0.84
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSWNAGRMG 325
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 27.9 bits (59), Expect = 0.12
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVVLLNAA 392
G T V SE +W PD+VL N A
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYNNA 113
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.5 bits (58), Expect = 0.16
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAA 392
V S+ +WRPD+VL N A
Sbjct: 105 VPSDHIWRPDIVLYNNA 121
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.5 bits (58), Expect = 0.16
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAA 392
V S+ +WRPD+VL N A
Sbjct: 105 VPSDHIWRPDIVLYNNA 121
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 27.5 bits (58), Expect = 0.16
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAA 392
V S+ +WRPD+VL N A
Sbjct: 101 VPSDHIWRPDIVLYNNA 117
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 27.1 bits (57), Expect = 0.21
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 318 EWGCSTWL-VSSERLWRPDVVLLNAA 392
E+G T L V SE +W PD+VL N A
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVLYNNA 113
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 26.2 bits (55), Expect = 0.36
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVVLLNAA 392
G V SE +W PD+VL N A
Sbjct: 104 GVEMLYVPSENIWLPDIVLYNNA 126
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 25.4 bits (53), Expect = 0.64
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 351 ERLWRPDVVLLNAAATTXGDYALR 422
+++W+PD+VL N A G+Y +R
Sbjct: 106 DKVWKPDIVLFNNA---DGNYEVR 126
Score = 22.2 bits (45), Expect = 5.9
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 191 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGRMG 325
K+ VN L ++ N+ E ++ L+ W D +L W+ G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 25.0 bits (52), Expect = 0.84
Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 286
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 287 IDKRLSWNAGRMGLQHLA 340
D RL++ R G++ L+
Sbjct: 68 TDPRLAFKK-RTGVETLS 84
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAA 392
V R+WRPD +L N A
Sbjct: 82 VPYNRVWRPDTILYNNA 98
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.8 bits (49), Expect = 1.9
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 286
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 287 IDKRLSWNAGRMGLQHLA 340
D RL++ R G++ L+
Sbjct: 68 TDPRLAFKK-RTGVETLS 84
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 23.0 bits (47), Expect = 3.4
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 780 AGXQRXPPXPPPP 742
A Q+ PP PPPP
Sbjct: 1349 AWRQQQPPPPPPP 1361
Score = 22.6 bits (46), Expect = 4.5
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -1
Query: 771 QRXPPXPPPP 742
Q+ PP PPPP
Sbjct: 1353 QQPPPPPPPP 1362
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 22.2 bits (45), Expect = 5.9
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3
Query: 351 ERLWRPDVVLLN 386
ER+WRPD N
Sbjct: 115 ERIWRPDTYFYN 126
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,368
Number of Sequences: 438
Number of extensions: 3294
Number of successful extensions: 38
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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