Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_M19
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 237 2e-63
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 233 2e-62
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 40 3e-04
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 29 1.0
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 27 3.1
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 26 5.4
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom... 25 9.4
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 25 9.4
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 25 9.4
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 237 bits (579), Expect = 2e-63
Identities = 111/172 (64%), Positives = 134/172 (77%)
Frame = +1
Query: 112 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 291
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL +TWEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 292 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 471
IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV D
Sbjct: 70 TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129
Query: 472 PAQDHQPITEASYVNIPVIALCNTDSPLXFVDIAIPCNTKSSHSIGLMWVVV 627
P D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W ++
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLL 181
Score = 29.5 bits (63), Expect = 0.58
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 620 WLLAREXLRLXGVLPRDXXWNVXVDL 697
+LLARE LRL G + R W V DL
Sbjct: 179 YLLAREVLRLRGNISRTTAWEVMPDL 204
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 233 bits (570), Expect = 2e-62
Identities = 107/176 (60%), Positives = 136/176 (77%)
Frame = +1
Query: 100 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 279
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 280 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLL 459
R + IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+
Sbjct: 65 RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124
Query: 460 IVLDPAQDHQPITEASYVNIPVIALCNTDSPLXFVDIAIPCNTKSSHSIGLMWVVV 627
+V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W ++
Sbjct: 125 VVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLL 180
Score = 31.1 bits (67), Expect = 0.19
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2
Query: 620 WLLAREXLRLXGVLPRDXXWNVXVDL 697
+LLARE LR+ G L R W+V DL
Sbjct: 178 YLLAREVLRVRGTLSRSAPWDVMPDL 203
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 40.3 bits (90), Expect = 3e-04
Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 27/177 (15%)
Frame = +1
Query: 145 MLAATTHLGAENV--NFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVF 318
+L++ HLG N + ++Y +R +G H+I+L +T L A V +I +
Sbjct: 53 LLSSGAHLGHSTSIWNPYTQPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGII 111
Query: 319 VISSRPFGQR-AVLKFAAHTGATPIAGRFTPGAFTN--QIQA------------------ 435
+ GQ+ +V+ A I R+ PG TN ++Q
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQT 171
Query: 436 ----AFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLXFVDIAIPCNTKS 594
++ P L+++L+P ++ EA ++P I + +TD+ V IP N S
Sbjct: 172 DKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDS 228
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +1
Query: 235 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 411
V+++R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 3.1
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -1
Query: 498 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DD 319
S GL L R + E F + +S + W T + + G+RG ++ EGP D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225
Query: 318 EHISGVLDG 292
H SGV G
Sbjct: 226 LH-SGVFGG 233
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 26.2 bits (55), Expect = 5.4
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = +1
Query: 370 HTGATPIAGRFTPGAFTNQIQAAFR--EPRLLIVLDPAQDHQPI---TEASYVNIPVIAL 534
+ A P G T+ I A F+ +P + ++ D + T A + + L
Sbjct: 29 YVNAAPHLGHLYSLVLTDAI-ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQL 87
Query: 535 CNTDSPLXFVDIAIPCNTKSSHSI 606
C+ +S F D+A+ NTK +H I
Sbjct: 88 CDRNSK-RFADLAVAANTKFTHFI 110
>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -2
Query: 608 PIEWEDLVLHGIAMSTNXSGESVLHKAITGMLTYEASVMG 489
PIE+E++ + G+ + SG++ LH+AI + + + G
Sbjct: 49 PIEFEEIDVTGMEKNNKSSGDA-LHEAIQSLKRNKVGLKG 87
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 9.4
Identities = 6/25 (24%), Positives = 17/25 (68%)
Frame = -3
Query: 319 RTHQRGSRWLRQHEQPEQVFPRYDA 245
R H++ + W ++HE+P+ + +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -2
Query: 635 HVPTTTHIKPIEWEDLVLH-GIAMSTNXSGESVLHKAITGML 513
H+ H+ L+LH ++T+ SG +H AITG+L
Sbjct: 342 HLSFPIHVPNFMITSLLLHKDRIITTSGSGTIQIHNAITGVL 383
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,165,373
Number of Sequences: 5004
Number of extensions: 67203
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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