Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_M18
(822 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 41 0.001
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 39 0.004
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 36 0.039
03_01_0238 + 1854070-1854344,1854621-1854712,1854852-1855045,185... 34 0.16
02_02_0604 - 12064451-12065683,12065729-12065827,12065858-120659... 33 0.27
03_02_0046 - 5255513-5255630,5255715-5255876,5256579-5256733,525... 30 1.9
03_05_0587 - 25878948-25879201,25879290-25879361,25881091-25881451 29 3.4
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037... 29 4.5
08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614 29 5.9
03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484 28 7.8
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 41.1 bits (92), Expect = 0.001
Identities = 35/125 (28%), Positives = 52/125 (41%)
Frame = +2
Query: 98 EQFGFRSKHSCVQQVHRLTEHILIGLNRRKQFPTGALFFDIAKAFDKVWHNGLIYKLYNM 277
+Q GF K C+ + ++ + RK T + D AKAFD V L L
Sbjct: 5 DQTGFL-KGRCISENLIYATELIQACHARK-CQTLIIKLDFAKAFDSVNWQSLFQILSVK 62
Query: 278 GVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPLLFSLYINDIPRSPE 457
G PD + I++ L + G + G+ QG LSP LF L + + R E
Sbjct: 63 GFPDNWISWIKNLLQTSKSAVLLHGIPGKWITCKKGLRQGDPLSPYLFILVADVLQRLLE 122
Query: 458 THLAL 472
+L +
Sbjct: 123 RNLQI 127
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 39.1 bits (87), Expect = 0.004
Identities = 33/126 (26%), Positives = 54/126 (42%)
Frame = +2
Query: 50 GNASGILLPANKILIDEQFGFRSKHSCVQQVHRLTEHILIGLNRRKQFPTGALFFDIAKA 229
G G++L K++ D +GF K +Q + + K+ L D KA
Sbjct: 407 GRLQGVIL---KLVSDNHYGF-IKGKTIQDCPAWPFEYIHQCQQSKR-EIVLLKLDFEKA 461
Query: 230 FDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALS 409
FD + H+ ++ + +MG P + + ++ S S + G + GV QG LS
Sbjct: 462 FDTIEHSAILSVMQHMGFPLKWIEWVQMVFSTASSAVLLNGVPGNSFKCRRGVRQGVPLS 521
Query: 410 PLLFSL 427
LLF L
Sbjct: 522 LLLFVL 527
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 35.9 bits (79), Expect = 0.039
Identities = 47/186 (25%), Positives = 73/186 (39%), Gaps = 14/186 (7%)
Frame = +2
Query: 98 EQFGFRSKHSCVQQVHRLTEHILIGLNRRKQFPTGALFFDIAKAFDKVWHNGLIYKLYNM 277
+Q GF + + TE LI R++ T + D KAFD V + L L
Sbjct: 1020 DQTGFLKGRCISENLIYATE--LIQACYRRKCQTIIVKLDFTKAFDSVIWSSLFKILAVR 1077
Query: 278 GVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPLLFSLYINDIPRSPE 457
G P+ + I+ LS+ + G R G+ QG LS LF L + + R E
Sbjct: 1078 GFPENWISWIKGLLSSSKSAVLLNGVPGRWICCKKGLLQGDPLSSYLFILVADVLQRLLE 1137
Query: 458 THLAL--------------FADDTAIYYSCRKMSLLHRRLQIAVATMGQWFRKWRIDINP 595
+ + +ADDT I Y + +L + T+ Q+ + + IN
Sbjct: 1138 RNTEIRHAIYQDRPCTTIQYADDTLIIYRAEEADVLALK-----ETLLQFSKATGLQINF 1192
Query: 596 TKSAAV 613
KS +
Sbjct: 1193 AKSTMI 1198
>03_01_0238 +
1854070-1854344,1854621-1854712,1854852-1855045,
1855529-1855568,1855734-1855815,1856972-1857049,
1857144-1857269,1857544-1857665,1858018-1858057,
1858250-1858324,1858414-1858585
Length = 431
Score = 33.9 bits (74), Expect = 0.16
Identities = 25/65 (38%), Positives = 30/65 (46%)
Frame = +2
Query: 488 AIYYSCRKMSLLHRRLQIAVATMGQWFRKWRIDINPTKSAAVLFKRGRLRTSLRASHSVX 667
AI CR RRL A A + +WRID N +AA RGR R SL A S+
Sbjct: 32 AIRCCCRAQQEPRRRLSKAAAAAPERTEEWRIDGNKPAAAA----RGRRRASLTAMPSLP 87
Query: 668 XRNXR 682
+ R
Sbjct: 88 FPSPR 92
>02_02_0604 -
12064451-12065683,12065729-12065827,12065858-12065955,
12066782-12066924,12067233-12067729
Length = 689
Score = 33.1 bits (72), Expect = 0.27
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Frame = +2
Query: 335 RYRVEGTRSRPRQLTAGVPQGSALSPLLFSL---------YINDIPRSPETHLALFADDT 487
R + GT S P + G+ QG LSPLLF L +N R+P +L+ADD
Sbjct: 216 RIDINGTLSDPFKPMRGLRQGDPLSPLLFVLKAMSAGLLDKVNQWSRAPNN--SLYADDA 273
Query: 488 AIYY 499
I++
Sbjct: 274 VIFF 277
>03_02_0046 -
5255513-5255630,5255715-5255876,5256579-5256733,
5256811-5256892,5257790-5257827
Length = 184
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = -1
Query: 129 HECLERNPNCSSMRILFAGNKI--PEAFPKEPFVN 31
H+ L + P+ + + +L GNKI PEAFPK+ F +
Sbjct: 111 HDLLSK-PSLTGIPLLVIGNKIDKPEAFPKQSFTD 144
>03_05_0587 - 25878948-25879201,25879290-25879361,25881091-25881451
Length = 228
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +1
Query: 520 ASSATPDRSSHHGTVVPEVANRHQPHEKRSGALQKGSPPNITSSIPL 660
A A P + P + H KR G L +GSPP S+P+
Sbjct: 144 AREAPPPPPAAEKLSPPPQQHDDSDHNKRVGPLPRGSPPPYAQSVPV 190
>04_04_0233 +
23801944-23802598,23802914-23803047,23803548-23803730,
23804145-23804318
Length = 381
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +2
Query: 497 YSCRKMSLLHRRLQIA----VATMGQWFRKWRIDINPTKSAAVLFKRGR 631
+S L+HR L A VA + R WR + P + AA L RGR
Sbjct: 89 FSALPPELVHRALAAAGASDVAAASRACRAWRDALRPLREAAALHARGR 137
>08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614
Length = 248
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 350 GTRSRPRQLTAGVPQGSALSP 412
G RSRPR+ AG PQ +A SP
Sbjct: 156 GRRSRPRRCLAGRPQATAGSP 176
>03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484
Length = 663
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +2
Query: 215 DIAKAFDKVWHNGLIYKLYNMG-VPDRLVL 301
D+A+AF+ V H G + +YN+G V +R V+
Sbjct: 230 DVAEAFEVVLHKGEVGHVYNIGTVKERRVI 259
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,736,334
Number of Sequences: 37544
Number of extensions: 488374
Number of successful extensions: 1332
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1331
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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