Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_M14
         (838 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321...    30   2.0  
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    29   3.5  
09_02_0426 + 9176147-9176297,9177118-9177624,9177985-9178715           29   4.6  
07_03_1747 + 29188568-29188715,29188793-29189541                       29   6.1  

>11_06_0411 -
           23230580-23230795,23231407-23231862,23232142-23232195,
           23232251-23232367
          Length = 280

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 44  VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 160
           V+ H  +  R S EL+RQ  ELER+G  L+   G L  +
Sbjct: 89  VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127


>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = -3

Query: 146 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQNAGSG 6
           H P AAA  P VP++    P  L +     GG GL   S S  A  G
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGG 52


>09_02_0426 + 9176147-9176297,9177118-9177624,9177985-9178715
          Length = 462

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 23/72 (31%), Positives = 32/72 (44%)
 Frame = +2

Query: 8   LTLHFETC*HS*VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTLVEA*RGTAK 187
           L++  E C +  V V + D  RS   L   T++ ++ G    H A  L T +E   G   
Sbjct: 52  LSVLLEKCKNVEVNVQQEDQQRSIPLLLYLTSQSDKNGSTPLHFAASLKTSIE---GFTS 108

Query: 188 RGCNHRRGLXSP 223
           R C H R   SP
Sbjct: 109 RLCEHFRPKQSP 120


>07_03_1747 + 29188568-29188715,29188793-29189541
          Length = 298

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +1

Query: 199 PPPGTTLSAPVYLITAPSPX*XAWTLALQFLCS*TIGPTTCRLARSSSVLG 351
           PPP TT++  V L TA +       +  QF+C+     TTC  + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,801,701
Number of Sequences: 37544
Number of extensions: 414287
Number of successful extensions: 1044
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)