Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_M13
(827 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 31 1.1
12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232 30 2.0
06_01_0194 + 1503350-1503554,1504399-1504490,1504835-1504935,150... 30 2.0
06_01_0760 - 5676973-5677830 23 4.2
10_08_0218 - 15967064-15967906 23 4.2
10_08_0217 - 15962192-15962884 23 4.3
12_01_0524 - 4167867-4168445 29 4.5
09_04_0506 - 18188785-18190599 29 4.5
07_03_0287 - 16283460-16283658,16283696-16283802 29 4.5
03_02_0765 + 11000724-11002496 25 5.2
12_02_0972 + 24956974-24957447 28 7.9
04_01_0530 - 6928528-6929500,6929514-6930964 28 7.9
03_05_0269 - 22545925-22546554,22546663-22547010,22547447-22547797 28 7.9
02_04_0242 + 21210062-21210541 28 7.9
01_06_0561 + 30251547-30252173,30252248-30252405,30253250-302541... 28 7.9
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -3
Query: 324 HQPSAAAPLPCVPXQSFVDPIHXKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 160
H P AAA P VP + P + S GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
Length = 1035
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = +3
Query: 474 LGXXRXGQXTXPXXXXPASXXXXXXXGXGGGXXGGGGGAXXXXG 605
+G R G + P P S GGG GGGGG G
Sbjct: 32 VGAARGGPRSDPATPIPVSPRVSVMRRGGGGGGGGGGGGGGGGG 75
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +3
Query: 552 GXGGGXXGGGGGAXXXXGPXXRRRXR 629
G GGG GGGGG G RR R
Sbjct: 64 GGGGGGGGGGGGGRGGRGGHARRDAR 89
>06_01_0194 +
1503350-1503554,1504399-1504490,1504835-1504935,
1506186-1506276,1506616-1506674,1506764-1506884,
1506959-1507027,1507321-1507373,1507688-1507796,
1507895-1508065,1508148-1508306,1508561-1508650,
1508751-1508933,1509837-1510027,1510340-1510787
Length = 713
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +3
Query: 552 GXGGGXXGGGGGAXXXXGPXXRRRXRXXG 638
G GGG GGGGG G R R R G
Sbjct: 683 GGGGGGRGGGGGGGGGRGGRGRGRGRGRG 711
>06_01_0760 - 5676973-5677830
Length = 285
Score = 22.6 bits (46), Expect(3) = 4.2
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 558 GGGXXGGGGG 587
GGG GGGGG
Sbjct: 155 GGGQGGGGGG 164
Score = 22.2 bits (45), Expect(3) = 4.2
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 552 GXGGGXXGGGG 584
G GGG GGGG
Sbjct: 113 GEGGGGGGGGG 123
Score = 21.0 bits (42), Expect(3) = 4.2
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +3
Query: 561 GGXXGGGGGAXXXXG 605
GG GGGGG G
Sbjct: 202 GGGQGGGGGGGQNGG 216
>10_08_0218 - 15967064-15967906
Length = 280
Score = 22.6 bits (46), Expect(3) = 4.2
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 558 GGGXXGGGGG 587
GGG GGGGG
Sbjct: 113 GGGQGGGGGG 122
Score = 22.2 bits (45), Expect(3) = 4.2
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 552 GXGGGXXGGGG 584
G GGG GGGG
Sbjct: 72 GGGGGQGGGGG 82
Score = 21.0 bits (42), Expect(3) = 4.2
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +3
Query: 561 GGXXGGGGGAXXXXG 605
GG GGGGG G
Sbjct: 153 GGGQGGGGGGGQNGG 167
>10_08_0217 - 15962192-15962884
Length = 230
Score = 22.6 bits (46), Expect(3) = 4.3
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 558 GGGXXGGGGG 587
GGG GGGGG
Sbjct: 112 GGGQGGGGGG 121
Score = 22.2 bits (45), Expect(3) = 4.3
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 552 GXGGGXXGGGG 584
G GGG GGGG
Sbjct: 71 GGGGGGGGGGG 81
Score = 21.0 bits (42), Expect(3) = 4.3
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +3
Query: 561 GGXXGGGGGAXXXXG 605
GG GGGGG G
Sbjct: 153 GGGQGGGGGGGYNGG 167
>12_01_0524 - 4167867-4168445
Length = 192
Score = 29.1 bits (62), Expect = 4.5
Identities = 22/72 (30%), Positives = 31/72 (43%)
Frame = -3
Query: 321 QPSAAAPLPCVPXQSFVDPIHXKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 142
QPS+AA P + + + YSH G + S + G + G GGG P V
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160
Query: 141 CEERVDHEGQ*C 106
EE + E + C
Sbjct: 161 VEEVEEEEEKEC 172
>09_04_0506 - 18188785-18190599
Length = 604
Score = 29.1 bits (62), Expect = 4.5
Identities = 21/62 (33%), Positives = 24/62 (38%)
Frame = +3
Query: 552 GXGGGXXGGGGGAXXXXGPXXRRRXRXXGXPXXXXPXVRRSVLXGXXGVXLAXPPXXXRR 731
G GGG GGGGG G R + P R L G G+ +A PP
Sbjct: 319 GPGGGGGGGGGGNWGRGGGGMGGRGQAGNMRNRMGPVGGRG-LMGNGGM-VAPPPPMLHP 376
Query: 732 GG 737
GG
Sbjct: 377 GG 378
>07_03_0287 - 16283460-16283658,16283696-16283802
Length = 101
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +3
Query: 558 GGGXXGGGGGAXXXXGPXXRRRXRXXG 638
G G GGGGG GP R R R G
Sbjct: 37 GEGGSGGGGGGGGDGGPSRRSRWRGGG 63
>03_02_0765 + 11000724-11002496
Length = 590
Score = 25.0 bits (52), Expect(2) = 5.2
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +3
Query: 558 GGGXXGGGGGAXXXXG 605
GGG GGGGGA G
Sbjct: 50 GGGGLGGGGGAGGGFG 65
Score = 25.0 bits (52), Expect(2) = 5.2
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +3
Query: 558 GGGXXGGGGGAXXXXG 605
GGG GGGGGA G
Sbjct: 88 GGGGLGGGGGAGGGFG 103
Score = 22.2 bits (45), Expect(2) = 5.2
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 552 GXGGGXXGGGG 584
G GGG GGGG
Sbjct: 43 GGGGGFGGGGG 53
Score = 22.2 bits (45), Expect(2) = 5.2
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 552 GXGGGXXGGGG 584
G GGG GGGG
Sbjct: 81 GKGGGLGGGGG 91
>12_02_0972 + 24956974-24957447
Length = 157
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +2
Query: 323 CPRXACGGLTXXCXXPXXPPXXTPARRARXSNXGVRL 433
C R A L C PP PARR R G RL
Sbjct: 57 CVRRAFANLDRACRSTRVPPAGRPARRIRFRLVGGRL 93
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 57 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 197
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>03_05_0269 - 22545925-22546554,22546663-22547010,22547447-22547797
Length = 442
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +3
Query: 552 GXGGGXXGGGGGAXXXXGPXXRR 620
G GGG GGGGG G RR
Sbjct: 30 GGGGGGGGGGGGGGGGRGARGRR 52
>02_04_0242 + 21210062-21210541
Length = 159
Score = 28.3 bits (60), Expect = 7.9
Identities = 21/62 (33%), Positives = 22/62 (35%)
Frame = +3
Query: 558 GGGXXGGGGGAXXXXGPXXRRRXRXXGXPXXXXPXVRRSVLXGXXGVXLAXPPXXXRRGG 737
GGG GGG GP RRR R G P + G G P RGG
Sbjct: 19 GGGRGEAGGGGGDGAGPRRRRRAR-RGRGGGSPPSSLPDLAGGGKG---RPPTAAMARGG 74
Query: 738 PG 743
G
Sbjct: 75 GG 76
>01_06_0561 +
30251547-30252173,30252248-30252405,30253250-30254192,
30254271-30254438,30254546-30254857,30255498-30255557,
30255905-30255937,30256083-30256271
Length = 829
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +3
Query: 552 GXGGGXXGGGGGAXXXXGPXXRRRXRXXG 638
G GGG GGGGG G RR G
Sbjct: 25 GGGGGGGGGGGGTGGGGGGGGRRGGEDGG 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,729,026
Number of Sequences: 37544
Number of extensions: 272782
Number of successful extensions: 4641
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3644
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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