Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_M12
         (822 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333...    31   0.84 
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550     30   2.6  
02_04_0452 + 23044190-23045227                                         29   3.4  
04_01_0041 - 464695-464850,467485-469029                               29   5.9  
01_05_0227 - 19512866-19514983                                         29   5.9  

>01_01_0448 -
           3332238-3332330,3332414-3332481,3332570-3332618,
           3332716-3332798,3332900-3333023,3333389-3333486,
           3333555-3333634,3333712-3333782,3333872-3333953,
           3334158-3334237,3334365-3334416,3334843-3334958
          Length = 331

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +3

Query: 546 AISATSTRSSNPRFHTPTTP 605
           A S+T+TR S PR H PTTP
Sbjct: 2   AASSTATRLSPPRLHAPTTP 21


>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
          Length = 204

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +3

Query: 528 IKPPSPAISATSTR-SSNPR--FHTPTTPDLTSISINP 632
           I PPSPA +  S+R S +PR  F TP T   T+ S +P
Sbjct: 25  ITPPSPASTPRSSRPSESPRSGFSTPATAPRTAASPSP 62


>02_04_0452 + 23044190-23045227
          Length = 345

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +1

Query: 481 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPP 603
           H  +L H+      +A SH    SR H P  + P S   PP
Sbjct: 166 HGCLLLHHAGHGHGHAHSHSHSHSRAHNPSTRPPTSAPPPP 206


>04_01_0041 - 464695-464850,467485-469029
          Length = 566

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 245 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 421
           +I   R + D++ T  +SN + V +LP VSS  + Y D ++   +    P   P  ++ V
Sbjct: 40  LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99

Query: 422 TVD 430
            +D
Sbjct: 100 PLD 102


>01_05_0227 - 19512866-19514983
          Length = 705

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 462 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 370
           S +T + +QQ   +  ++ LG  GKTT ++L
Sbjct: 18  SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,979,358
Number of Sequences: 37544
Number of extensions: 452722
Number of successful extensions: 1344
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)