Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_M10
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    27   2.5  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   5.7  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    26   7.5  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   10.0 
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   10.0 

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +1

Query: 553 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIXMFSTHRDCESTXY 687
           Y+C  +  +S G L  SED ++ W    K GLI  F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 717 LAKTLYXKGSIXRAFAVPMRTEH 649
           +A+ L   GSI   FAVP++ EH
Sbjct: 401 IAELLEILGSIINGFAVPLKEEH 423


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 670  SPYAY*TXGSSQLLPFCSTRGF 605
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +3

Query: 339  FARSSLKNHYFHCFITYSVGRKRCAVDNIGGRTVFRSKRAEW*RGGNARRRLKLLRD 509
            +  + ++ HY   F  YS+  K    D  G      + R EW +    R  +K +R+
Sbjct: 1954 YGHAEVQAHYGQDFREYSILTKSFEKDEDGNVKGINTVRIEWTKNSKGRWIMKEIRN 2010


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 142 GYLKRVIVTPAVYPRLLEFLHVDIQST 62
           G+++R+ V    YP LLE+L++ + S+
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSS 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,175,180
Number of Sequences: 5004
Number of extensions: 60981
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)