Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_M08
         (960 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   0.057
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    24   1.7  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    24   3.6  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   3.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   5.2  
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo...    26   6.9  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect(2) = 0.057
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 448 PPPPPPPXXXKKK 486
           PPPPPPP   KK+
Sbjct: 24  PPPPPPPGYVKKR 36



 Score = 24.2 bits (50), Expect(2) = 0.057
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +1

Query: 445 SPPPPPPP 468
           +PPPPPPP
Sbjct: 8   NPPPPPPP 15


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.8 bits (49), Expect(2) = 1.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 448 PPPPPPP 468
           PPPPPPP
Sbjct: 761 PPPPPPP 767



 Score = 22.6 bits (46), Expect(2) = 1.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 445 SPPPPPP 465
           SPPPPPP
Sbjct: 731 SPPPPPP 737


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.8 bits (49), Expect(2) = 3.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 448 PPPPPPP 468
           PPPPPPP
Sbjct: 946 PPPPPPP 952



 Score = 21.4 bits (43), Expect(2) = 3.6
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +1

Query: 445 SPPPPPP 465
           +PPPPPP
Sbjct: 906 TPPPPPP 912


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 448  PPPPPPPXXXKKK 486
            PPPPPPP   +KK
Sbjct: 1096 PPPPPPPAEVEKK 1108


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = +1

Query: 451 PPPPPPXXXKKKXTXXXXXGGXXXXXXTPPP 543
           PPPPPP   + +       G        PPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341


>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
           element|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1333

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 89  PVNPALGFEFLPSRPNQVPSRN 24
           P N  LG EFLP + N   SRN
Sbjct: 206 PQNKNLGKEFLPKKNNTTNSRN 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,545,116
Number of Sequences: 5004
Number of extensions: 18904
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)