Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_M06
(819 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 31 0.75
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 31 0.75
Z68161-10|CAN86582.1| 705|Caenorhabditis elegans Hypothetical p... 29 3.0
Z68161-8|CAH60763.1| 625|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z68161-5|CAA92299.2| 764|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z68161-4|CAD89735.1| 781|Caenorhabditis elegans Hypothetical pr... 29 3.0
AY185494-1|AAO26317.1| 764|Caenorhabditis elegans poly ADP-ribo... 29 3.0
AY185493-1|AAO26316.1| 781|Caenorhabditis elegans poly ADP-ribo... 29 3.0
AF068718-4|AAC17765.1| 98|Caenorhabditis elegans Hypothetical ... 28 9.2
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 31.5 bits (68), Expect = 0.75
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = -2
Query: 257 DVVYRLDIEMKTEMCQGLRQKEKVCKEGRKVGXRSLLAMEAESKVGSYFES 105
D+ L+I +K E+C G RQK++V E ++G + +E+E K+G +S
Sbjct: 556 DLRANLEIGLK-EICDGRRQKQEVLDE--QIGKYRAIFVESERKIGVLSQS 603
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 31.5 bits (68), Expect = 0.75
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = -2
Query: 257 DVVYRLDIEMKTEMCQGLRQKEKVCKEGRKVGXRSLLAMEAESKVGSYFES 105
D+ L+I +K E+C G RQK++V E ++G + +E+E K+G +S
Sbjct: 556 DLRANLEIGLK-EICDGRRQKQEVLDE--QIGKYRAIFVESERKIGVLSQS 603
>Z68161-10|CAN86582.1| 705|Caenorhabditis elegans Hypothetical
protein F20C5.1d protein.
Length = 705
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 350 IQANANRSDPD--WRYTAVRIFSKTQHKINEGSIFGPWESMP 469
+Q + N+ DPD +RY + F +Q K+ E + +GP +P
Sbjct: 284 LQPDLNKVDPDRNYRYCTIPNFPASQGKLREDNRYGPKIVLP 325
>Z68161-8|CAH60763.1| 625|Caenorhabditis elegans Hypothetical
protein F20C5.1c protein.
Length = 625
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 350 IQANANRSDPD--WRYTAVRIFSKTQHKINEGSIFGPWESMP 469
+Q + N+ DPD +RY + F +Q K+ E + +GP +P
Sbjct: 128 LQPDLNKVDPDRNYRYCTIPNFPASQGKLREDNRYGPKIVLP 169
>Z68161-5|CAA92299.2| 764|Caenorhabditis elegans Hypothetical
protein F20C5.1b protein.
Length = 764
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 350 IQANANRSDPD--WRYTAVRIFSKTQHKINEGSIFGPWESMP 469
+Q + N+ DPD +RY + F +Q K+ E + +GP +P
Sbjct: 267 LQPDLNKVDPDRNYRYCTIPNFPASQGKLREDNRYGPKIVLP 308
>Z68161-4|CAD89735.1| 781|Caenorhabditis elegans Hypothetical
protein F20C5.1a protein.
Length = 781
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 350 IQANANRSDPD--WRYTAVRIFSKTQHKINEGSIFGPWESMP 469
+Q + N+ DPD +RY + F +Q K+ E + +GP +P
Sbjct: 284 LQPDLNKVDPDRNYRYCTIPNFPASQGKLREDNRYGPKIVLP 325
>AY185494-1|AAO26317.1| 764|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-3 short form protein.
Length = 764
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 350 IQANANRSDPD--WRYTAVRIFSKTQHKINEGSIFGPWESMP 469
+Q + N+ DPD +RY + F +Q K+ E + +GP +P
Sbjct: 267 LQPDLNKVDPDRNYRYCTIPNFPASQGKLREDNRYGPKIVLP 308
>AY185493-1|AAO26316.1| 781|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-3 long form protein.
Length = 781
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 350 IQANANRSDPD--WRYTAVRIFSKTQHKINEGSIFGPWESMP 469
+Q + N+ DPD +RY + F +Q K+ E + +GP +P
Sbjct: 284 LQPDLNKVDPDRNYRYCTIPNFPASQGKLREDNRYGPKIVLP 325
>AF068718-4|AAC17765.1| 98|Caenorhabditis elegans Hypothetical
protein R01B10.3 protein.
Length = 98
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +2
Query: 296 ECINLNEYSQLSNKTQAVIQANANRSDPDW---RYTAVRIFSKTQHKINEGSI 445
+C+ + +++ ++ + NA R +P W RYTA+ +F + GSI
Sbjct: 21 DCVKQRKVAEVPQIGYSLDELNAKREEPKWRVARYTAIAMFWGIWGALLAGSI 73
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,878,822
Number of Sequences: 27780
Number of extensions: 433437
Number of successful extensions: 1052
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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