Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_M03
(798 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 31 0.25
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 29 1.0
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S... 27 3.1
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.1
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 27 3.1
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 27 4.1
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 27 4.1
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 26 5.4
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 7.2
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 9.5
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 30.7 bits (66), Expect = 0.25
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 362 PATTQTTILRVPPLLHDVTLTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASP-DTNA 538
P T+ T + PP+ + P ++ TST T T + P T+++ +T+
Sbjct: 1643 PITSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTST 1702
Query: 539 P 541
P
Sbjct: 1703 P 1703
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Frame = +2
Query: 347 PQQILPATTQTTILRVP-PLLHDVTLTLRKPT--------ANTCQARTSTHFTGKTCIRQ 499
P L ++ TTI P + + KPT ANT TST T T +
Sbjct: 321 PSVALSTSSTTTITNASTPAANTIISRSSKPTDTTNSISFANTTPENTSTQITSPTAVNS 380
Query: 500 RNPNTAAS 523
P T++S
Sbjct: 381 STPITSSS 388
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 484 NLHPPAEPEHRRIARHERTGRL 549
NL PAE +HRR+ R +R G L
Sbjct: 235 NLDSPAELKHRRLVRSQRNGPL 256
>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 317 KTFYHHANFLPQQILPATTQTTILRVPPLLHDVTLTLRKPTANTCQART 463
+TF HHAN P++IL + R L + ++K N +T
Sbjct: 13 RTFAHHANLTPRKILHDLPEAAHARKQIPLRPGVILVKKGMTNAWDEKT 61
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 330 TMQTSYRNKSYQPPRKLQFYGFHLSYTMLLSH*GSQPRTLVKHAQART 473
TM + ++K RKL+ HL + L++H QP +HAQ RT
Sbjct: 1356 TMLKTSQSKDSSSLRKLRATCLHLLFASLVAHKFDQP----QHAQTRT 1399
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 27.1 bits (57), Expect = 3.1
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +3
Query: 126 RALAQVQPERGGSNIGSPCWRRGLVVWRTRRPASXTVEAICPVLADWVGRDRGSLTSGYL 305
R L++ PE ++ P ++ G TR+ + ++A+CPVL + VG LT L
Sbjct: 336 RILSRKFPEGWEKHL--PVYKPGDKAVATRKLSEIVLDALCPVLPELVG-GSADLTPSNL 392
Query: 306 CR 311
R
Sbjct: 393 TR 394
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +1
Query: 346 TATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIA 525
T T S ++ + S S + H + +E S H+H HR++ EP ++
Sbjct: 110 TNTEKDSRSIAHSTSRSRSTSPANRHRRK-EKERTRSNHRHGSHRRH-----EPYRTHLS 163
Query: 526 RHER 537
RH R
Sbjct: 164 RHHR 167
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 4 WILKRILVLKSRTLNFLNQHSSFYTCVSLEENKN*SLLRGGAP*RKCSRSAG 159
WI+ VLK+ + F++ +T +S+ ++RGG SRS G
Sbjct: 102 WIIGEAGVLKTLLMLFISYAVGIFTSLSISAICTNGMVRGGGAYYAVSRSIG 153
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 620 NKKASKFPWGRKIDTSEVVVTCKIRRPVRS 531
N+ + +FP+ KI TCK +P RS
Sbjct: 142 NEASRRFPYDYKIFFPNKCSTCKFEKPARS 171
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 430 EANREHLSSTHKHALHRKNLHPPAEPEHRRIARHERTGRLILQVTTTSD 576
E N ++L + K +L PP + R E+TG L Q T+TS+
Sbjct: 60 EINDKNLEA-EKDIESNLSLRPPEDDLDSRSIESEQTGTLSKQTTSTSE 107
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +2
Query: 332 HANFLPQQILPATTQTTILRVPPLLHDVTLTLRKPT--ANT 448
H N + P T T VPP H T T+ PT ANT
Sbjct: 114 HVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTVVPPTTHANT 154
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,062,238
Number of Sequences: 5004
Number of extensions: 57945
Number of successful extensions: 205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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