Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_M03
(798 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0201 + 5728377-5728584,5729044-5729153,5729231-5729286,572... 33 0.35
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815... 32 0.61
10_08_0793 - 20614583-20614897,20615417-20615660,20617713-206178... 31 0.80
04_04_0452 + 25342306-25342552,25342658-25342785,25342868-253431... 29 4.3
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302... 29 4.3
08_02_0707 - 20212190-20214592 29 5.7
01_06_0140 - 26881282-26881290,26882027-26882128,26882816-268829... 29 5.7
11_04_0008 + 12115147-12115354,12115397-12116130 28 7.5
05_05_0227 - 23449579-23450459,23450574-23450691 28 7.5
07_03_1544 - 27585581-27585757,27585986-27586091,27586246-275863... 28 9.9
06_03_0913 + 25913231-25913609,25913702-25913775,25914400-259145... 28 9.9
03_04_0023 + 16537257-16537272,16537515-16537929,16538404-165384... 28 9.9
02_01_0624 - 4681834-4682298,4684250-4684398,4684479-4684557,468... 28 9.9
>09_02_0201 +
5728377-5728584,5729044-5729153,5729231-5729286,
5729396-5729480,5729550-5729597,5729723-5729797,
5729893-5730004,5730371-5730536,5730579-5730630,
5730729-5730786,5731029-5731127,5731219-5731349
Length = 399
Score = 32.7 bits (71), Expect = 0.35
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -3
Query: 187 LQHGLPILEPPRSGCTCARARRLVGDFNFCSLRAIRRYKSYYVD*GSLEYDSS 29
LQH LPI+ P RS +C+ +R + F + I R Y +D S D+S
Sbjct: 222 LQHFLPIMNPVRSESSCSSSRVIAISACFTGMSLICRGCYYILDLHSFRKDNS 274
>01_06_0381 +
28878811-28879120,28880189-28880331,28880753-28881532,
28882568-28883968
Length = 877
Score = 31.9 bits (69), Expect = 0.61
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 424 TEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHERTGR 546
+ E EH SS +H HR + H + EHR RH+R R
Sbjct: 778 SSEDEHEHRSSKSRHR-HRDDYHYHEDDEHRSSHRHQRDHR 817
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +1
Query: 364 SHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRR 519
S NY+ S +R H E +R H S HKH L R + EP H R
Sbjct: 725 SDEENYDSEESYKHSR-KKHRSEDSRAHTSDVHKHKLKRHS--KDLEPRHHR 773
>10_08_0793 -
20614583-20614897,20615417-20615660,20617713-20617899,
20618508-20618547,20618699-20618775,20618965-20619091
Length = 329
Score = 31.5 bits (68), Expect = 0.80
Identities = 27/86 (31%), Positives = 35/86 (40%)
Frame = +1
Query: 337 KLLTATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHR 516
++ T L HH N RC+S ++ A L H H ++ L P E E R
Sbjct: 98 QIWTDMQLQDHHHECN----GPYCRCHSSSKHAKGSLLLLHHHH--QQQQLQRPNEMETR 151
Query: 517 RIARHERTGRLILQVTTTSDVSIFLP 594
R +TG L Q DVS LP
Sbjct: 152 RAEASTQTGFLRSQGICERDVSSGLP 177
>04_04_0452 +
25342306-25342552,25342658-25342785,25342868-25343110,
25344530-25344782,25344916-25345151
Length = 368
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 435 GFLSVRVTSCKRGGTRKIVVCVVAGKICCGKK-FAWW 328
GF++ +V C +G I +C A +C + +A+W
Sbjct: 291 GFVTAKVACCGQGPYNGIGLCTPASNVCANRDVYAYW 327
>01_07_0213 -
42028941-42029055,42029444-42029480,42029876-42030244,
42030332-42031201,42051574-42052891
Length = 902
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 289 SPPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEANREHL 450
S PAT + + P +LLT+ TSH + N T S SH + + RE L
Sbjct: 685 SSPATASAAAASKKP-RLLTSQTTTSHTSTSNATTPRSFDTTSSHQDASFRESL 737
>08_02_0707 - 20212190-20214592
Length = 800
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +1
Query: 364 SHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARH 531
SHH +++ S + S TE + +E+ S H H H + H +E H++ H
Sbjct: 549 SHHHDHHHDSSNEESHHNSLTENSCKENHSHCHGHDHHHHHHHDHSE-HHQQSGDH 603
>01_06_0140 -
26881282-26881290,26882027-26882128,26882816-26882924,
26883712-26883860,26883941-26884043,26884635-26884810,
26885004-26885066,26885258-26885346,26885428-26885538,
26885610-26885744,26886415-26886580,26886788-26886856,
26886943-26887230,26888612-26888866
Length = 607
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2
Query: 551 IRRPVRSCLAMRRCSGSAGGCRFFR*SACLCVLDKCSRL 435
+R R A R C GSAG R R SA V+ + RL
Sbjct: 31 LRPAARLSFAPRWCGGSAGAARARRESAVTSVISRAPRL 69
>11_04_0008 + 12115147-12115354,12115397-12116130
Length = 313
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 180 CWRRGLVVWRTRRPASXTVEAICPVLADWVGRDRGSLTSG 299
CWR+GLV R+ A+ P AD GRD G+ G
Sbjct: 72 CWRKGLVRDSPRQRLDGCGLAVAPCSAD-AGRDDGAGVPG 110
>05_05_0227 - 23449579-23450459,23450574-23450691
Length = 332
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 242 RLDGXGGRPTGPPNDETTPPAR 177
R DG GGRP+ P E T P R
Sbjct: 231 RGDGGGGRPSAPARREGTDPCR 252
>07_03_1544 -
27585581-27585757,27585986-27586091,27586246-27586338,
27587840-27587958,27588486-27588746,27589226-27589515,
27589624-27590152
Length = 524
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 311 SAQVAGGETSAVAAHPVRENRADRLDGXGGRPTG 210
S +GG +A AA V ADR+ G G+P G
Sbjct: 62 SPSPSGGRHAAPAAAAVGSKEADRVAGLPGQPAG 95
>06_03_0913 +
25913231-25913609,25913702-25913775,25914400-25914540,
25914834-25914946,25915359-25915491,25916213-25916351,
25916428-25916527,25916906-25916963,25917122-25917199,
25917278-25917376,25917657-25917735,25917826-25917974,
25918529-25918834,25918994-25919032
Length = 628
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -2
Query: 575 SEVVVTCKIRRPVRS--CLAMRRC 510
S++ +TCKI RPVRS C RC
Sbjct: 398 SQLCITCKIVRPVRSKHCSTCDRC 421
>03_04_0023 +
16537257-16537272,16537515-16537929,16538404-16538466,
16538604-16538607
Length = 165
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 394 STSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHE 534
+TSL R H + + H HA H + PP H ++ RHE
Sbjct: 5 ATSLNRSIDHKQGGQQRGTPQQHLHAGHAQE-QPPGH-GHGQVQRHE 49
>02_01_0624 -
4681834-4682298,4684250-4684398,4684479-4684557,
4684827-4684925,4685004-4685081,4685231-4685288,
4685814-4685913,4686000-4686008,4686105-4686138,
4686729-4686911,4687099-4687126,4687268-4687380,
4688253-4688459,4689212-4689511
Length = 633
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -2
Query: 575 SEVVVTCKIRRPVRS--CLAMRRC 510
S++ +TCKI RPVRS C RC
Sbjct: 363 SQLCITCKIVRPVRSKHCSTCDRC 386
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,986,020
Number of Sequences: 37544
Number of extensions: 466646
Number of successful extensions: 1703
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1702
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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