Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_M03
(798 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical pr... 32 0.41
U39999-6|AAA81107.2| 198|Caenorhabditis elegans Hypothetical pr... 24 2.9
Z49909-11|CAA90113.1| 154|Caenorhabditis elegans Hypothetical p... 29 5.1
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 29 5.1
U67954-4|AAM54180.1| 345|Caenorhabditis elegans Wrapper/rega-1/... 29 5.1
AF456364-1|AAL60235.1| 344|Caenorhabditis elegans immunoglobuli... 29 5.1
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z50795-1|CAA90662.1| 502|Caenorhabditis elegans Hypothetical pr... 28 8.9
U55374-4|AAB36866.2| 589|Caenorhabditis elegans Immunoglobulin-... 28 8.9
U55374-3|ABS19462.1| 591|Caenorhabditis elegans Immunoglobulin-... 28 8.9
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 28 8.9
>Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical
protein M02G9.3 protein.
Length = 294
Score = 32.3 bits (70), Expect = 0.41
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 434 PTANTCQARTSTHFTGKTCIRQRNPNTAASPDTNAPDVLSYR--SRRLQMCQFFFPTETC 607
P+ ++CQ+ S+ T TCIR N+ ++ + + R S+ LQ+C T TC
Sbjct: 90 PSCSSCQSACSSACTTPTCIRTCQRNSCSNLCNTGSNSCTNRCNSQCLQICTTPSCTNTC 149
Query: 608 LLSC 619
SC
Sbjct: 150 SNSC 153
>U39999-6|AAA81107.2| 198|Caenorhabditis elegans Hypothetical
protein F41G3.10 protein.
Length = 198
Score = 24.2 bits (50), Expect(2) = 2.9
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +2
Query: 437 TANTCQARTSTHFTGKTCIRQRNPNTAASPDT 532
T C +T T TC+ NP T S T
Sbjct: 83 TCGYCTGTATTTRTSTTCVDLTNPTTGVSDCT 114
Score = 23.8 bits (49), Expect(2) = 2.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 287 SHLRLPVQTHKTFYHHANFLPQQILPATTQTTI 385
S L + V +TF L QQ+L TT+T++
Sbjct: 10 SLLEVVVALMETFSQSPQHLQQQLLSTTTRTSV 42
>Z49909-11|CAA90113.1| 154|Caenorhabditis elegans Hypothetical
protein C14A4.9 protein.
Length = 154
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +2
Query: 359 LPATTQTTILRVPPLLHDVTLTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASPDTNA 538
+P +T TT +L TL R PT T Q + TC AA+ +TN
Sbjct: 19 VPTSTPTTTTPCCSMLSQSTLPRRNPTITTQQQCSVLQRVSSTCPVDGIVICAAAQETNP 78
Query: 539 PDVL 550
++L
Sbjct: 79 DNIL 82
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/58 (27%), Positives = 21/58 (36%)
Frame = +2
Query: 359 LPATTQTTILRVPPLLHDVTLTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASPDT 532
LP TT+ T+ P + + +KPT T T K P T P T
Sbjct: 591 LPFTTEQTVTTEEPTTAEKSTATQKPTTTQESVSTEKTSTTKKASTTEEPTTTDEPTT 648
>U67954-4|AAM54180.1| 345|Caenorhabditis elegans
Wrapper/rega-1/klingon homologprotein 1, isoform c
protein.
Length = 345
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -2
Query: 347 VRSLHGGKMSCESAQVAGGETSAVAAHPVRENRADRLDGXGGRPTGPP 204
V+ H GK +C + +AG + + + H + +R GRP GPP
Sbjct: 177 VKKHHAGKYNCLAENIAGSDRATIDIHVAEPLQGER----EGRP-GPP 219
>AF456364-1|AAL60235.1| 344|Caenorhabditis elegans immunoglobulin
domain-containingprotein WRK-1C protein.
Length = 344
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -2
Query: 347 VRSLHGGKMSCESAQVAGGETSAVAAHPVRENRADRLDGXGGRPTGPP 204
V+ H GK +C + +AG + + + H + +R GRP GPP
Sbjct: 176 VKKHHAGKYNCLAENIAGSDRATIDIHVAEPLQGER----EGRP-GPP 218
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 27.9 bits (59), Expect = 8.9
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +2
Query: 398 PLLHDVTLTLRKPTANTCQARTSTH-----FTGKTCIRQRNPNTAASPDTNAPDVLSYRS 562
P LHDVTL + +AR S T K+ I R P P+ ++PD S S
Sbjct: 1775 PQLHDVTLDKLRDRIEKLEARLSATEKKPVETVKSTIPDR-PEVPEEPEKSSPDRTSRSS 1833
Query: 563 RRLQMCQFFFPTE 601
+L M + TE
Sbjct: 1834 LQLAMEAYGTATE 1846
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 27.9 bits (59), Expect = 8.9
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +2
Query: 398 PLLHDVTLTLRKPTANTCQARTSTH-----FTGKTCIRQRNPNTAASPDTNAPDVLSYRS 562
P LHDVTL + +AR S T K+ I R P P+ ++PD S S
Sbjct: 1775 PQLHDVTLDKLRDRIEKLEARLSATEKKPVETVKSTIPDR-PEVPEEPEKSSPDRTSRSS 1833
Query: 563 RRLQMCQFFFPTE 601
+L M + TE
Sbjct: 1834 LQLAMEAYGTATE 1846
>Z50795-1|CAA90662.1| 502|Caenorhabditis elegans Hypothetical
protein R166.1 protein.
Length = 502
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 280 AEVSPPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTR 411
A + P T S + PP TA + + NF+G+ S+TR
Sbjct: 205 AGILPATTTNVSAAVPPPSSRATANVFSGNSIGLNFSGAASVTR 248
>U55374-4|AAB36866.2| 589|Caenorhabditis elegans
Immunoglobulin-like cell adhesionmolecule family protein
3, isoform a protein.
Length = 589
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 189 RGLVVWRTRRPASXTVEAICP 251
R +V WR R+P V+A CP
Sbjct: 293 RPIVYWRMRKPNGDVVDAACP 313
>U55374-3|ABS19462.1| 591|Caenorhabditis elegans
Immunoglobulin-like cell adhesionmolecule family protein
3, isoform b protein.
Length = 591
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 189 RGLVVWRTRRPASXTVEAICP 251
R +V WR R+P V+A CP
Sbjct: 293 RPIVYWRMRKPNGDVVDAACP 313
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 27.9 bits (59), Expect = 8.9
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +2
Query: 398 PLLHDVTLTLRKPTANTCQARTSTH-----FTGKTCIRQRNPNTAASPDTNAPDVLSYRS 562
P LHDVTL + +AR S T K+ I R P P+ ++PD S S
Sbjct: 1775 PQLHDVTLDKLRDRIEKLEARLSATEKKPVETVKSTIPDR-PEVPEEPEKSSPDRTSRSS 1833
Query: 563 RRLQMCQFFFPTE 601
+L M + TE
Sbjct: 1834 LQLAMEAYGTATE 1846
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,631,735
Number of Sequences: 27780
Number of extensions: 361086
Number of successful extensions: 1374
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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