Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_M02
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 40 0.002
02_05_0686 - 30900748-30902167,30903442-30904742 34 0.17
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 31 1.2
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 31 1.2
05_01_0493 + 4113869-4116728,4116859-4117370 31 1.2
08_01_0059 - 394001-394708 31 1.6
02_04_0242 + 21210062-21210541 30 2.1
12_02_1174 - 26696869-26698191 30 2.7
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 29 4.8
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 29 6.3
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/62 (37%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Frame = +2
Query: 338 PPGNPXXGPXXXXLKTXGXXPPAXGXAPXXAAPXXXSXXGXPPPRGK--HTGPGXPXXXX 511
PP NP GP G PP G P AP G PPP + GPG P
Sbjct: 23 PPMNPY-GPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQ 81
Query: 512 PP 517
PP
Sbjct: 82 PP 83
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 33.9 bits (74), Expect = 0.17
Identities = 20/54 (37%), Positives = 20/54 (37%)
Frame = +2
Query: 338 PPGNPXXGPXXXXLKTXGXXPPAXGXAPXXAAPXXXSXXGXPPPRGKHTGPGXP 499
PP P P K PPA G P P S PPP GK GP P
Sbjct: 328 PPPPPKAAPPPPPPKGPPPPPPAKG-PPPPPPPKGPSPPPPPPPGGKKGGPPPP 380
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = +2
Query: 338 PPGNPXXGPXXXXLKTXGXXPPAXGXAPXXAAPXXXSXXGXPPPRGK 478
PP P P K PP G +P P G PPP K
Sbjct: 337 PPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPK 383
Score = 29.1 bits (62), Expect = 4.8
Identities = 19/79 (24%), Positives = 20/79 (25%)
Frame = +3
Query: 570 PXPPXXXXGPPXXGASPXXXPXXXXXGPRXSAXKNXXXXXXGTPXXXXPXXXRXXXXPPP 749
P PP P A P P P G P P PPP
Sbjct: 311 PAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPP 370
Query: 750 XPXXGAPGXGXXTGXRARP 806
G P G +RP
Sbjct: 371 GGKKGGPPPPPPKGGASRP 389
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/70 (28%), Positives = 22/70 (31%)
Frame = +1
Query: 598 PRXRAHPXXPAXXXGXAXRAXRPPRTXXXXXXVXPXXXPPXXXGXXXXPPPXPXAXPXGX 777
PR P P+ A PP P PP G PPP P + P
Sbjct: 594 PRVPRPPPAPSATANTASALPPPP---PRPPGAPPPPPPPGKPGGPPPPPPRPGSLPRNL 650
Query: 778 AXRXAXXRAP 807
A RAP
Sbjct: 651 AGGDKVHRAP 660
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/70 (28%), Positives = 22/70 (31%)
Frame = +1
Query: 598 PRXRAHPXXPAXXXGXAXRAXRPPRTXXXXXXVXPXXXPPXXXGXXXXPPPXPXAXPXGX 777
PR P P+ A PP P PP G PPP P + P
Sbjct: 899 PRVPRPPPAPSATANTASALSPPP---PRPPGAPPPPPPPGKPGGPPPPPPPPGSLPRNL 955
Query: 778 AXRXAXXRAP 807
A RAP
Sbjct: 956 AGGDKVHRAP 965
>05_01_0493 + 4113869-4116728,4116859-4117370
Length = 1123
Score = 31.1 bits (67), Expect = 1.2
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Frame = +2
Query: 137 SSQRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILAD-LQMNWIDKRLSWNA----- 298
+S R G+LPP NLT H N E R+ D L + ++D LS N
Sbjct: 493 ASNRLAGALPPEMSGCRNLTFVDLHDNAISGELPPRLFRDWLSLQYLD--LSDNVIAGGI 550
Query: 299 -XEMGLATXLXXXVPPGNPXXGP 364
E+G+ T L V GN GP
Sbjct: 551 PPEIGMLTSLTKLVLGGNRLSGP 573
>08_01_0059 - 394001-394708
Length = 235
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/53 (32%), Positives = 17/53 (32%)
Frame = +2
Query: 701 PXXXPRXXPXXXXXPPXPPXRXPXXRRXDXXXXAPRGXPPXALXPXRXRXAPP 859
P PR P PP PP R P P P A P APP
Sbjct: 3 PPPPPRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTPRPYAPPPPSHPLAPP 55
>02_04_0242 + 21210062-21210541
Length = 159
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/53 (28%), Positives = 17/53 (32%)
Frame = +1
Query: 280 TTELERXGNGAGXXLXXGGXPGKPFXGXXLXXPXNXGGXPPRXGXCAXXGGPG 438
T + R G G G + G P P GG PP GG G
Sbjct: 67 TAAMARGGGGDGDDVRAGAAAAAPLPSPSQIWPEEGGGRPPAAATTTARGGGG 119
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/53 (30%), Positives = 19/53 (35%)
Frame = +2
Query: 701 PXXXPRXXPXXXXXPPXPPXRXPXXRRXDXXXXAPRGXPPXALXPXRXRXAPP 859
P P P PP PP R P + P+ PP +L P PP
Sbjct: 146 PQPPPSLPPPPPPPPPPPPPRPPSVK---PPVVQPKPQPPPSLQPPSPPPPPP 195
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Frame = +2
Query: 713 PRXXPXXXXXPPXPPXRXPXXRRXDXXXX-APRGXPPXALXPXRXRXAPP 859
P+ P PP P R P APR PP A P + PP
Sbjct: 216 PKGAPPPPPPPPPSPHRHPAAHPPPPPHHPAPRPPPPMAAAPRQPAALPP 265
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/57 (31%), Positives = 19/57 (33%)
Frame = -2
Query: 473 RGGGAPXFXXKXPGPPXXAHXPXRGGXPPXFXGXXXXXPXKGFPGXPPXXSXXPAPF 303
R G P PGPP P P G P G P PP S P P+
Sbjct: 381 RVAGKPPQPAVPPGPPAVPAPPTYPPADPA-AGGYTSQPYMGAPPPPPPGSYAPVPW 436
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,359,940
Number of Sequences: 37544
Number of extensions: 421933
Number of successful extensions: 1063
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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