Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_M02
(861 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated... 36 0.049
AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical ... 35 0.086
Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical pr... 33 0.26
L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte upt... 32 0.46
AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein. 32 0.46
AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine... 32 0.46
AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical... 31 0.80
Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical pr... 30 1.8
U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated io... 30 1.8
AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical ... 30 1.8
AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical ... 30 1.8
AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical ... 30 1.8
AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical ... 30 1.8
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 30 1.8
Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical pr... 30 2.4
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 30 2.4
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 30 2.4
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 30 2.4
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.4
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.4
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.4
Z70266-4|CAA94206.3| 534|Caenorhabditis elegans Hypothetical pr... 29 3.2
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 29 4.3
AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical ... 29 4.3
Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z67737-2|CAA91537.3| 400|Caenorhabditis elegans Hypothetical pr... 29 5.6
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 29 5.6
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 29 5.6
AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical ... 29 5.6
AC084197-24|AAM44390.1| 297|Caenorhabditis elegans Collagen pro... 29 5.6
Z67737-3|CAA91538.2| 399|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 7.4
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 7.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 7.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 7.4
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 28 7.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 7.4
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 28 7.4
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 28 7.4
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 28 7.4
Z92837-3|CAB07402.3| 502|Caenorhabditis elegans Hypothetical pr... 28 9.8
U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protei... 28 9.8
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 28 9.8
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 28 9.8
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 28 9.8
AC084197-42|AAU87806.2| 544|Caenorhabditis elegans Acetylcholin... 28 9.8
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 28 9.8
>AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated
ion channel protein 1 protein.
Length = 371
Score = 35.5 bits (78), Expect = 0.049
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 164 PPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAXEMG 310
PP +++ + + + L+ ++ E E V L D W D+RL WN E G
Sbjct: 51 PPITELKLTMAM-LKLVDVVEVEEKVTFLFDYLAEWTDQRLKWNPLEYG 98
>AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical
protein Y45G5AL.2 protein.
Length = 404
Score = 34.7 bits (76), Expect = 0.086
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 164 PPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAXEMG 310
PP +I + L++ ++ + E E L D + +W D RLSW+ + G
Sbjct: 79 PPRFEITIQLSM-MKLVEVVEPEEKATFLFDYRADWYDTRLSWDPEDYG 126
>Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.6 protein.
Length = 401
Score = 33.5 bits (73), Expect = 0.20
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 191 LTLHLRHANIRESESTVRILADLQMNWIDKRLSWNA 298
L +L+ ++E E V ++ +L W D RLSWN+
Sbjct: 79 LLYYLKLVEVQEPEEKVSVVLELVEQWYDPRLSWNS 114
>Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.1 protein.
Length = 399
Score = 33.1 bits (72), Expect = 0.26
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 200 HLRHANIRESESTVRILADLQMNWIDKRLSWNAXE 304
+L+ + E E V ++ +L W D RLSWNA +
Sbjct: 81 NLKLIQVNEPEEQVSVVLELMEYWYDPRLSWNASD 115
>L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte uptake
defective protein4 protein.
Length = 433
Score = 32.3 bits (70), Expect = 0.46
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 182 VVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWN 295
+V++ H+ H +I + E T+ + + M W D+ L W+
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111
>AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein.
Length = 433
Score = 32.3 bits (70), Expect = 0.46
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 182 VVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWN 295
+V++ H+ H +I + E T+ + + M W D+ L W+
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111
>AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine
receptor protein 6 protein.
Length = 562
Score = 32.3 bits (70), Expect = 0.46
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 215 NIRESESTVRILADLQMNWIDKRLSWNAXEMGLATXL 325
++ E + + + L +W+D RLSWN E G T +
Sbjct: 44 DVHEKDQVITLKGTLIHHWLDYRLSWNPDEFGNITLM 80
>AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical
protein Y105C5B.16 protein.
Length = 400
Score = 31.5 bits (68), Expect = 0.80
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 200 HLRHANIRESESTVRILADLQMNWIDKRLSWNA 298
+L+ ++E + + ++ ++ W D RLSWNA
Sbjct: 80 YLKLVEVQEPQEKISVVMEIMEYWYDARLSWNA 112
>Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.5 protein.
Length = 401
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 191 LTLHLRHANIRESESTVRILADLQMNWIDKRLSWN 295
L +L+ ++E V ++ +L W D RLSWN
Sbjct: 79 LLYYLKLVEVQEPAEKVSVVLELVERWYDPRLSWN 113
>Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 164 PPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAXEMG 310
PP + V L L H I E + T+ +L + +W+D L+W+ G
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFG 132
>Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 164 PPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAXEMG 310
PP + V L L H I E + T+ +L + +W+D L+W+ G
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFG 132
>U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated ion
channel protein 3 protein.
Length = 355
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +2
Query: 164 PPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAXE 304
PP ++ ++ + L H I E +++L + W D LSW E
Sbjct: 86 PPDGRVDISHNIELVHIIGINELNQNMQVLVYIVQQWTDASLSWKVEE 133
>AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 164 PPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAXEMG 310
PP + V L L H I E + T+ +L + +W+D L+W+ G
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFG 132
>AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 164 PPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAXEMG 310
PP + V L L H I E + T+ +L + +W+D L+W+ G
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFG 132
>AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 164 PPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAXEMG 310
PP + V L L H I E + T+ +L + +W+D L+W+ G
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFG 132
>AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 164 PPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAXEMG 310
PP + V L L H I E + T+ +L + +W+D L+W+ G
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFG 132
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/68 (32%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Frame = +1
Query: 301 GNGAGXXLXXGGXPGKP-FXGXXLXXPXNXGGXPPRXGXCAXXGGPGXXFXKXGAPPPRX 477
G G G PG P G P G PP G G P F GAPPP
Sbjct: 404 GGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPP--GGPGAYGPPPTGFPPVGAPPPGA 461
Query: 478 THXPRXXP 501
P P
Sbjct: 462 AGAPGGNP 469
>Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical
protein C33G3.3 protein.
Length = 409
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +2
Query: 152 IGSLPPX----SKIVVNLT-LHLRHANIRESESTVRILADLQMNWIDKRLSWN 295
I S+PP + +N L+H + E + I L+++W D RL WN
Sbjct: 47 IASIPPNYLSQQPVTINFAQFTLQHFELNEHLKDISIHGYLELSWHDDRLMWN 99
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 158 SLPPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAXEMG 310
S P + + L L L ++ E + + L+ WID++LSW+ G
Sbjct: 45 STSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLSWDPVNYG 96
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 158 SLPPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAXEMG 310
S P + + L L L ++ E + + L+ WID++LSW+ G
Sbjct: 45 STSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLSWDPVNYG 96
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 158 SLPPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAXEMG 310
S P + + L L L ++ E + + L+ WID++LSW+ G
Sbjct: 45 STSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLSWDPVNYG 96
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/73 (28%), Positives = 23/73 (31%), Gaps = 3/73 (4%)
Frame = +3
Query: 570 PXPPXXXXGPPXXGA-SPXXXPXXXXXGP--RXSAXKNXXXXXXGTPXXXXPXXXRXXXX 740
P PP PP G+ SP P P S P P R
Sbjct: 238 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 297
Query: 741 PPPXPXXGAPGXG 779
PPP P G+P G
Sbjct: 298 PPPPPPRGSPPTG 310
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Frame = -2
Query: 461 APXFXXKXPGPPXXAHXPXRGGX--PPXFXGXXXXXPXKGFPGXPPXXSXXPAP 306
AP P PP P G PP P G P PP S P P
Sbjct: 231 APPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 284
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/73 (28%), Positives = 23/73 (31%), Gaps = 3/73 (4%)
Frame = +3
Query: 570 PXPPXXXXGPPXXGA-SPXXXPXXXXXGP--RXSAXKNXXXXXXGTPXXXXPXXXRXXXX 740
P PP PP G+ SP P P S P P R
Sbjct: 259 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 318
Query: 741 PPPXPXXGAPGXG 779
PPP P G+P G
Sbjct: 319 PPPPPPRGSPPTG 331
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Frame = -2
Query: 461 APXFXXKXPGPPXXAHXPXRGGX--PPXFXGXXXXXPXKGFPGXPPXXSXXPAP 306
AP P PP P G PP P G P PP S P P
Sbjct: 252 APPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 305
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/73 (28%), Positives = 23/73 (31%), Gaps = 3/73 (4%)
Frame = +3
Query: 570 PXPPXXXXGPPXXGA-SPXXXPXXXXXGP--RXSAXKNXXXXXXGTPXXXXPXXXRXXXX 740
P PP PP G+ SP P P S P P R
Sbjct: 244 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 303
Query: 741 PPPXPXXGAPGXG 779
PPP P G+P G
Sbjct: 304 PPPPPPRGSPPTG 316
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Frame = -2
Query: 461 APXFXXKXPGPPXXAHXPXRGGX--PPXFXGXXXXXPXKGFPGXPPXXSXXPAP 306
AP P PP P G PP P G P PP S P P
Sbjct: 237 APPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 290
>Z70266-4|CAA94206.3| 534|Caenorhabditis elegans Hypothetical
protein C40C9.2 protein.
Length = 534
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/45 (24%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 179 IVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAXEMG 310
+VV++ ++L+ ++ E + ++A ++ W D +L W+ E G
Sbjct: 53 LVVSVKIYLQQILDVDEKNQVITLVAWIEYQWTDYKLKWDPSEYG 97
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/64 (29%), Positives = 20/64 (31%), Gaps = 4/64 (6%)
Frame = +2
Query: 338 PPGNPXXGPXXXXLKTXGXXPPAXGXAPXXAAPXXXSXXGXPPPRGKHT----GPGXPXX 505
P G P GP PP+ G P G P P G T GP P
Sbjct: 206 PSGPPSPGPVDPSEDPKPSEPPSPGPVDPSDEPSPSDPPGPPGPPGPPTRRPPGPPGPPT 265
Query: 506 XXPP 517
PP
Sbjct: 266 RRPP 269
>AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical
protein F15E6.2 protein.
Length = 445
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/48 (22%), Positives = 25/48 (52%)
Frame = +2
Query: 173 SKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAXEMGLA 316
+K+V ++ + + I E V++ ++W D +SW+ + GL+
Sbjct: 83 TKVVRVESVRINNVEIDERRQNVKVFGRFVLSWNDTMVSWDKEQWGLS 130
>Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical
protein C35C5.5 protein.
Length = 531
Score = 28.7 bits (61), Expect = 5.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 257 LQMNWIDKRLSWNAXEMG 310
L+M W DK+L+WN + G
Sbjct: 81 LEMQWYDKKLTWNPTDWG 98
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/55 (30%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Frame = +2
Query: 338 PPGNPXX-GPXXXXLKTXGXXPPAXGXAPXXAAPXXXSXXGXPPPRGKHTGPGXP 499
PPG P GP PP G P A P + P G PG P
Sbjct: 160 PPGPPGPEGPNGTAGNKGPAGPPGPGGKPGPAGPPGENGRNGEPQPGSPGEPGRP 214
>Z67737-2|CAA91537.3| 400|Caenorhabditis elegans Hypothetical
protein T01H10.2 protein.
Length = 400
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 203 LRHANIRESESTVRILADLQMNWIDKRLSWNA 298
L+ + E V ++ ++ W D RLSWNA
Sbjct: 81 LKLVEVNEPAEKVAVVMEIMEYWYDIRLSWNA 112
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/59 (30%), Positives = 19/59 (32%)
Frame = +2
Query: 341 PGNPXXGPXXXXLKTXGXXPPAXGXAPXXAAPXXXSXXGXPPPRGKHTGPGXPXXXXPP 517
PG P GP PP AP + P G P G PG P PP
Sbjct: 252 PGTP--GPAGPPGPPGPIGPPGQPGAPGSSQPGPQGPPGDPGIDGAPGNPGSPGEPGPP 308
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 134 RSSQRTIGSLPPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSW 292
R + T+ S P +VV+L + L+ N+ E E + + A L+ W D+ L W
Sbjct: 35 REERPTLDSSKP---VVVSLGVFLQQIINLSEKEEQLEVNAWLKFQWRDENLRW 85
>AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical
protein D2062.12 protein.
Length = 397
Score = 28.7 bits (61), Expect = 5.6
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 197 LHLRHAN-IRESESTVRILADLQMNWIDKRLSWN 295
LH+ H + I++ + +++ W+D+RL WN
Sbjct: 62 LHVDHIHDIQDEQGVLKMALTFTFTWMDERLMWN 95
>AC084197-24|AAM44390.1| 297|Caenorhabditis elegans Collagen
protein 112 protein.
Length = 297
Score = 28.7 bits (61), Expect = 5.6
Identities = 22/77 (28%), Positives = 23/77 (29%), Gaps = 3/77 (3%)
Frame = -2
Query: 527 ATXXXGXXXGXXRGXCVXRGGGAPXFXXKX--PGPPXXAHXPXRGGXPPXF-XGXXXXXP 357
A G G G C+ G K PG P A P G PP P
Sbjct: 83 AAGSAGAAGGSCSGCCLPGPAGPVGTPGKPGRPGKPGVAGLPGNPGRPPQAPCDPITPPP 142
Query: 356 XKGFPGXPPXXSXXPAP 306
K P PP P P
Sbjct: 143 CKPCPQGPPGVQGPPGP 159
>Z67737-3|CAA91538.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.3 protein.
Length = 399
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +2
Query: 191 LTLHLRHANIRESESTVRILADLQMNWIDKRLSWN 295
L L+ + E + V ++ ++ W D RL+WN
Sbjct: 78 LLFSLKLVEVTEPQEKVSVVMEVMEYWFDARLTWN 112
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/72 (30%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Frame = +2
Query: 338 PPGNPXXGPXXXXLKTXGXXPPAXGXAPXXAAPXXXSXXG---XPPPRGKHTGPGXPXXX 508
PPG P P + PP G P P G PPPR GPG
Sbjct: 310 PPGMPGMPPPPPPSR---FGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGM-YPP 365
Query: 509 XPPXLXXXXPXG 544
PP P G
Sbjct: 366 PPPSRPPAPPSG 377
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 7.4
Identities = 27/98 (27%), Positives = 27/98 (27%)
Frame = +2
Query: 338 PPGNPXXGPXXXXLKTXGXXPPAXGXAPXXAAPXXXSXXGXPPPRGKHTGPGXPXXXXPP 517
PPG P G PP G P P G PP G P P PP
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPP-----GGLPPISGGPPPPPPPPGGCPP 770
Query: 518 XLXXXXPXGAXXXXXLXPXXPXQXXRAPXXGRIPXXXP 631
P G P P AP IP P
Sbjct: 771 PPPPPPPGGFKGG---PPPPPPPGMFAPMAPVIPDYLP 805
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 7.4
Identities = 27/98 (27%), Positives = 27/98 (27%)
Frame = +2
Query: 338 PPGNPXXGPXXXXLKTXGXXPPAXGXAPXXAAPXXXSXXGXPPPRGKHTGPGXPXXXXPP 517
PPG P G PP G P P G PP G P P PP
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPP-----GGLPPISGGPPPPPPPPGGCPP 770
Query: 518 XLXXXXPXGAXXXXXLXPXXPXQXXRAPXXGRIPXXXP 631
P G P P AP IP P
Sbjct: 771 PPPPPPPGGFKGG---PPPPPPPGMFAPMAPVIPDYLP 805
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/72 (30%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Frame = +2
Query: 338 PPGNPXXGPXXXXLKTXGXXPPAXGXAPXXAAPXXXSXXG---XPPPRGKHTGPGXPXXX 508
PPG P P + PP G P P G PPPR GPG
Sbjct: 320 PPGMPGMPPPPPPSR---FGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGM-YPP 375
Query: 509 XPPXLXXXXPXG 544
PP P G
Sbjct: 376 PPPSRPPAPPSG 387
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/55 (30%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Frame = +2
Query: 338 PPGNPXX-GPXXXXLKTXGXXPPAXGXAPXXAAPXXXSXXGXPPPRGKHTGPGXP 499
PPG P GP PP G P A P + P G PG P
Sbjct: 162 PPGPPGPEGPNGEPGNKGPAGPPGPGGKPGPAGPPGENGNNGEPQPGAPGEPGQP 216
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 7.4
Identities = 27/98 (27%), Positives = 27/98 (27%)
Frame = +2
Query: 338 PPGNPXXGPXXXXLKTXGXXPPAXGXAPXXAAPXXXSXXGXPPPRGKHTGPGXPXXXXPP 517
PPG P G PP G P P G PP G P P PP
Sbjct: 299 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPP-----GGLPPISGGPPPPPPPPGGCPP 353
Query: 518 XLXXXXPXGAXXXXXLXPXXPXQXXRAPXXGRIPXXXP 631
P G P P AP IP P
Sbjct: 354 PPPPPPPGGFKGG---PPPPPPPGMFAPMAPVIPDYLP 388
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = -3
Query: 409 PXGGGXPPGFXXXXXXXPXRVSRGXXXPQVGXQPHFPCVPTQSFVDPIH 263
P G PP P + RG P + PHF P + F+ P H
Sbjct: 292 PFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPH 340
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = -3
Query: 409 PXGGGXPPGFXXXXXXXPXRVSRGXXXPQVGXQPHFPCVPTQSFVDPIH 263
P G PP P + RG P + PHF P + F+ P H
Sbjct: 292 PFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPH 340
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/68 (27%), Positives = 20/68 (29%), Gaps = 1/68 (1%)
Frame = +2
Query: 344 GNPXXGPXXXXLKTXGXXPPAXGXAPXXAAPXXXSXXGXPPPR-GKHTGPGXPXXXXPPX 520
G P GP + P G P G PPPR G H P PP
Sbjct: 1535 GGPGMGPSQYYHDSPQNRGPPMGGLPPPHGGMNGWRGGPPPPRGGSHCQGPPPLMGGPPP 1594
Query: 521 LXXXXPXG 544
P G
Sbjct: 1595 RLGMPPPG 1602
>Z92837-3|CAB07402.3| 502|Caenorhabditis elegans Hypothetical
protein R03E1.3 protein.
Length = 502
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 185 VNLTLHLRHAN-IRESESTVRILADLQMNWIDKRLSWNA 298
VN+ L + H + E E T + + WID+ + W+A
Sbjct: 54 VNVFLSIAHVEKVDEHEQTALVHGHIWATWIDEYMQWDA 92
>U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protein
139 protein.
Length = 310
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/64 (31%), Positives = 21/64 (32%), Gaps = 8/64 (12%)
Frame = +1
Query: 334 GXPGKPFXGXXLXXPXNXG--------GXPPRXGXCAXXGGPGXXFXKXGAPPPRXTHXP 489
G PG P G P G G P R G G PG + G P P P
Sbjct: 176 GKPGAPGVGGGSGAPGAPGPKGAPGGPGQPGRDGQPGQAGQPGSSSSEPGQPGPNGQPGP 235
Query: 490 RXXP 501
R P
Sbjct: 236 RGPP 239
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = -2
Query: 437 PGPPXXAHXPXRGGXPPXFXGXXXXXPXKGFPGXPPXXSXXPAPFP 300
PGPP A P + G P G G PG PP P P
Sbjct: 106 PGPPGPAGVPGKPGKP----GRPGAPGQPGVPGKPPTAPCEPTTPP 147
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Frame = +1
Query: 307 GAGXXLXXGGXPGKPFXGXXLXXPXNXG--GXPPRXGXCAXXGGPG 438
G G GG G P G P + G G PP G GGPG
Sbjct: 170 GMGGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPPGQGGPGGPGGPG 215
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Frame = +1
Query: 307 GAGXXLXXGGXPGKPFXGXXLXXPXNXG--GXPPRXGXCAXXGGPG 438
G G GG G P G P + G G PP G GGPG
Sbjct: 450 GMGGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPPGQGGPGGPGGPG 495
>AC084197-42|AAU87806.2| 544|Caenorhabditis elegans Acetylcholine
receptor protein 25 protein.
Length = 544
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 179 IVVNLTLHLRH-ANIRESESTVRILADLQMNWIDKRLSWNAXEMGLATXL 325
++V + L L+ ++ E V + A L+ +W+D L W + G T L
Sbjct: 51 VMVKMGLVLQQIVDVDEKNQVVDVNAWLKFSWVDYSLKWKPEDYGGVTDL 100
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = -2
Query: 437 PGPPXXAHXPXRGGXPPXFXGXXXXXPXKGFPGXPPXXSXXPAPFP 300
PGPP A P + G P G G PG PP P P
Sbjct: 106 PGPPGPAGVPGKPGKP----GRPGAPGQPGVPGKPPTAPCEPTTPP 147
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,476,361
Number of Sequences: 27780
Number of extensions: 311342
Number of successful extensions: 1322
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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