Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_M02
(861 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 27 0.17
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 27 0.22
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 27 0.22
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.29
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.29
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.29
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.29
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.29
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.29
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 23 2.7
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 2.7
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 23 3.6
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 23 3.6
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 23 4.8
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 22 6.3
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 6.3
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 22 8.4
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 27.5 bits (58), Expect = 0.17
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 185 VNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAXE 304
++ L ++H N+ E TV L++ W L+W + E
Sbjct: 62 IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSE 101
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 27.1 bits (57), Expect = 0.22
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = +2
Query: 128 STRSSQRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAXEM 307
S + +R + + ++ +TL + ++ E + A L++ W+D L WN E
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 308 G 310
G
Sbjct: 124 G 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 27.1 bits (57), Expect = 0.22
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = +2
Query: 128 STRSSQRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAXEM 307
S + +R + + ++ +TL + ++ E + A L++ W+D L WN E
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 308 G 310
G
Sbjct: 124 G 124
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.29
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 215 NIRESESTVRILADLQMNWIDKRLSWNAXEMG 310
++ E + A L++ W+D L WN E G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.29
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 215 NIRESESTVRILADLQMNWIDKRLSWNAXEMG 310
++ E + A L++ W+D L WN E G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.29
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 215 NIRESESTVRILADLQMNWIDKRLSWNAXEMG 310
++ E + A L++ W+D L WN E G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.29
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 215 NIRESESTVRILADLQMNWIDKRLSWNAXEMG 310
++ E + A L++ W+D L WN E G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.29
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 215 NIRESESTVRILADLQMNWIDKRLSWNAXEMG 310
++ E + A L++ W+D L WN E G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.29
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 215 NIRESESTVRILADLQMNWIDKRLSWNAXEMG 310
++ E + A L++ W+D L WN E G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 23.4 bits (48), Expect = 2.7
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 176 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAXEMG 310
K+ VN L ++ N+ E ++ L+ W D +L W+ + G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 23.4 bits (48), Expect = 2.7
Identities = 15/54 (27%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Frame = -3
Query: 412 SPXGGGXPPGFXXXXXXXPXRVSRGXXXPQVGXQPHFPCVPTQ-SFVDPIHLKI 254
SP GG PP P + P P +PT S PI +I
Sbjct: 403 SPAGGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMPSMAGPIRRRI 456
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.6
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = +2
Query: 179 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAXE 304
+V L+LH ++ E + + W D L WNA E
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASE 73
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 23.0 bits (47), Expect = 3.6
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = +2
Query: 179 IVVNLTLHLRHA---NIRESESTVRILADLQMNWIDKRLSWNAXEMGLATXL 325
+VV L L L N+++ T + L+ W D + W+ E G T L
Sbjct: 46 VVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWDPAEYGGVTEL 95
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 22.6 bits (46), Expect = 4.8
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +2
Query: 257 LQMNWIDKRLSWNAXEMG 310
++ W D +L WN E G
Sbjct: 86 VEQRWNDYKLKWNPEEYG 103
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 22.2 bits (45), Expect = 6.3
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +2
Query: 146 RTIGSLPPXSKIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAXEMG 310
R +G+ + + L L L N++ T + ++ W D +L WN + G
Sbjct: 37 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYKLKWNPDDYG 90
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 6.3
Identities = 15/67 (22%), Positives = 29/67 (43%)
Frame = +2
Query: 143 QRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAXEMGLATX 322
+R +G+ + LTL ++ ++ E + L++ W D + WN + G
Sbjct: 39 ERPVGNESEPLVLSFGLTL-MQIIDVDEKNQLLITNLWLKLEWNDVNMRWNVSDYGGVRD 97
Query: 323 LXXXVPP 343
L +PP
Sbjct: 98 L--RIPP 102
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 21.8 bits (44), Expect = 8.4
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +2
Query: 257 LQMNWIDKRLSWNAXEMG 310
++ +W D +L W+ E G
Sbjct: 77 VEQSWYDYKLKWDPKEYG 94
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,271
Number of Sequences: 438
Number of extensions: 4083
Number of successful extensions: 24
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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