Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_M01
         (883 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0054 - 404464-405152,406087-406618                               29   3.7  
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936...    29   6.5  
04_01_0530 - 6928528-6929500,6929514-6930964                           28   8.6  

>02_01_0054 - 404464-405152,406087-406618
          Length = 406

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 31/100 (31%), Positives = 37/100 (37%), Gaps = 7/100 (7%)
 Frame = -3

Query: 308 SQVLQPHSPCVPSQSFVDPIHL-------KICLYSHGGLGLTXVSMSQMQGQVDYDFGVG 150
           S  + P    V S  +VDP  L       K  +YS G L L  ++ S   G    D G G
Sbjct: 263 SAAVAPTRAAVGSPGYVDPFFLRTGIVSKKSDVYSFGVLLLEAITGSPAAGIPGPDGGAG 322

Query: 149 GGVPIVRCEERVDHEGQ*CCVFAFCRTSYSTSEEKXVTRI 30
           GG    R   RV  EG            Y  +E   V RI
Sbjct: 323 GGNLTARLLPRVRTEGVDGLADRRLGDDYDAAEAGDVARI 362


>04_04_0959 +
           29692740-29693035,29693102-29693267,29693433-29693612,
           29693703-29693771,29693888-29694088,29694187-29694240,
           29694325-29694386,29694488-29694620,29694789-29694899,
           29695008-29695104,29695638-29695714,29696129-29696194,
           29696431-29696583,29697392-29697447,29697524-29697584,
           29697656-29697766,29698010-29698144,29698217-29698447,
           29699001-29699075,29699161-29699282,29699381-29699453,
           29699538-29699642,29699728-29699895,29700079-29700148,
           29700224-29700375,29700574-29700651,29700744-29700836,
           29700961-29701098,29701237-29701276,29701350-29701423,
           29701777-29701911,29702345-29702464,29702778-29702939
          Length = 1287

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 23/80 (28%), Positives = 29/80 (36%)
 Frame = +2

Query: 71  CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPAFETC*HX*VRVHRANTGRSSNE 250
           CG        V H  L    V   LP R     +   A   C    +R HR ++ RS   
Sbjct: 20  CGLAAVAAGQVRHSPLLRAPVPGLLPERQAPEGRRPLAASRCLPTCLRRHRRSSRRSHRR 79

Query: 251 LDRQTTDLERRXSGAAXLGW 310
             R++  L RR      LGW
Sbjct: 80  CRRRSPRLWRRSGSGFLLGW 99


>04_01_0530 - 6928528-6929500,6929514-6930964
          Length = 807

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +2

Query: 44  VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 184
           +SP+LCY+ C   RK+       +L+  +  SGLPP++   S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,422,918
Number of Sequences: 37544
Number of extensions: 274679
Number of successful extensions: 605
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)