Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_M01
         (883 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    36   4e-04
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    32   0.008
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    25   1.2  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    25   1.2  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    25   1.2  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    25   1.2  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    25   1.2  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    25   1.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   1.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   1.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   8.6  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 36.3 bits (80), Expect = 4e-04
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = +3

Query: 81  CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANXRESESTVRIQADLQ 245
           C++ TS S +      L   YDRD  P+ K    ++  L ++H N  E   TV     L+
Sbjct: 28  CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87

Query: 246 MNWIDKRLTWNA 281
           + W    LTW +
Sbjct: 88  LMWEQSHLTWKS 99


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 31.9 bits (69), Expect = 0.008
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = +3

Query: 87  NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHANX-RESESTVRIQADLQMNW 254
           N +++S ++D+LL  YD    PD       V + + +R      E + T  +    + +W
Sbjct: 2   NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61

Query: 255 IDKRLTWNAG 284
           +D+RL +  G
Sbjct: 62  VDRRLAFQGG 71


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 207 ESESTVRIQADLQMNWIDKRLTWNAGXVG 293
           E    +   A L++ W+D  L WN    G
Sbjct: 28  EKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 207 ESESTVRIQADLQMNWIDKRLTWNAGXVG 293
           E    +   A L++ W+D  L WN    G
Sbjct: 28  EKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 207 ESESTVRIQADLQMNWIDKRLTWNAGXVG 293
           E    +   A L++ W+D  L WN    G
Sbjct: 28  EKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 207 ESESTVRIQADLQMNWIDKRLTWNAGXVG 293
           E    +   A L++ W+D  L WN    G
Sbjct: 28  EKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 207 ESESTVRIQADLQMNWIDKRLTWNAGXVG 293
           E    +   A L++ W+D  L WN    G
Sbjct: 28  EKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 207 ESESTVRIQADLQMNWIDKRLTWNAGXVG 293
           E    +   A L++ W+D  L WN    G
Sbjct: 28  EKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 207 ESESTVRIQADLQMNWIDKRLTWNAGXVG 293
           E    +   A L++ W+D  L WN    G
Sbjct: 96  EKNQILTTNAWLKLEWVDYNLQWNESEYG 124


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 207 ESESTVRIQADLQMNWIDKRLTWNAGXVG 293
           E    +   A L++ W+D  L WN    G
Sbjct: 96  EKNQILTTNAWLKLEWVDYNLQWNESEYG 124


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 104 GQ*CCVFAFCRTSYSTSEEKXVTRII 27
           G+ CC   F  T Y   + K VT+ I
Sbjct: 602 GEQCCWHCFNCTQYQIRDHKDVTQCI 627


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +3

Query: 159 KIVVNLTL-HLRHANXRESESTVRIQADLQMNWIDKRLTWNAGXVG 293
           K+ VN  L  ++  N  E    ++    L+  W D +L W+    G
Sbjct: 51  KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,498
Number of Sequences: 438
Number of extensions: 2251
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)