Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_L22
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    38   0.002
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc...    27   3.3  
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz...    27   3.3  
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo...    27   3.3  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   7.6  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    26   7.6  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 23/76 (30%), Positives = 40/76 (52%)
 Frame = +3

Query: 414 DVAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRHLTAGVPQ 593
           D+   FD + H+ LI  L +     R + +IR  L N  +      T +R ++   G PQ
Sbjct: 370 DIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKAL-NAGYL-----TENRYKYDIVGTPQ 423

Query: 594 GSALSPLLFSLYINDI 641
           GS +SP+L ++Y++ +
Sbjct: 424 GSIVSPILANIYLHQL 439


>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 585 VPQGSALSPLLFSLYINDIPGS-PETHLXLFADDTXIYYSCRKMSLLH 725
           +P G +++P  F  +IN I G   E+H+  + D+  I+       + H
Sbjct: 534 MPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKH 581


>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
           element|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1333

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 585 VPQGSALSPLLFSLYINDIPGS-PETHLXLFADDTXIYYSCRKMSLLH 725
           +P G +++P  F  +IN I G   E+H+  + D+  I+       + H
Sbjct: 534 MPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKH 581


>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
           element|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1333

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 585 VPQGSALSPLLFSLYINDIPGS-PETHLXLFADDTXIYYSCRKMSLLH 725
           +P G +++P  F  +IN I G   E+H+  + D+  I+       + H
Sbjct: 534 MPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKH 581


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 582 GVPQGSALSPLLFSLYINDI 641
           G+PQGS LS  L   Y+ D+
Sbjct: 703 GIPQGSILSSFLCHFYMEDL 722


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +1

Query: 82  WLPS*MLL*RTASFRRYGKKQTLSVYTSRANRIMKPLVTDRLVSSQR 222
           W+P      + ++ RRY +K   +V   R  ++ K L  ++ + +QR
Sbjct: 449 WVPKAKARGKNSALRRYLRKHARNVVDQRRLKVEKSLEIEKKMRAQR 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,437,699
Number of Sequences: 5004
Number of extensions: 71702
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)