Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_L15
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.1  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    26   7.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   9.5  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +1

Query: 319 PXGXGGGXPXGGGXPPXXGGGP 384
           P G GGG    GG P   GGGP
Sbjct: 244 PGGFGGGLGGFGGGPGGFGGGP 265



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 19/60 (31%), Positives = 19/60 (31%)
 Frame = +2

Query: 260 GXELGEFSNXXGSPKXXFXXPXGXGGGXPRGGGXPXXXXGAPXXFXF*XXGGXPPGGXXP 439
           G   G      G P      P G GGG    GG      G P  F     GG P G   P
Sbjct: 217 GHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGF-----GGGPGGHGGP 271


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 472 PPPPPKXXGGXXXPPP 519
           PPPPP    G   PPP
Sbjct: 763 PPPPPPGVAGAGPPPP 778



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 472 PPPPPKXXGGXXXPPP 519
           PPPPP   G    PPP
Sbjct: 764 PPPPPGVAGAGPPPPP 779


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 44  KCRRLILFCYRFSLTWCYS*CGRMRKRTSLVPH 142
           KC +++ FC   SL   +    R+ KR +L P+
Sbjct: 77  KCAKVVNFCILISLFNVFLVWSRLEKRAALFPY 109


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = -2

Query: 429 PPGGXPPXF*NXNXXGAPXXXXGXPPPRGXPPPXPXG 319
           PPG  PP          P    G  PP   PPP P G
Sbjct: 5   PPGNPPP----------PPPPPGFEPPSQPPPPPPPG 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,001,209
Number of Sequences: 5004
Number of extensions: 29940
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)