Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_L13
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.5  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   7.5  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/51 (31%), Positives = 17/51 (33%)
 Frame = +1

Query: 637 PGGXGGXXGGGGXXKNXXPRGAFLGAPPSXXXVGXXXXXXPXXXXXGXRGF 789
           PGG GG  G GG   +    G F G P             P     G  GF
Sbjct: 204 PGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF 254


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = -3

Query: 737 PTXXXLGGAPKKAPRGXXFFXXPPPPXXPPXPP 639
           P    +GG P   P        PPPP  PP PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPP--PPPPP 783


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 670  PPPPXGPPXPXGEKIXP 620
            PPPP  PP P G    P
Sbjct: 1715 PPPPSAPPMPAGPPSAP 1731


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 18  LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 116
           L++L  +G  SPC  RL   L  +++P    FW
Sbjct: 21  LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,646,262
Number of Sequences: 5004
Number of extensions: 19655
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)