Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_L13
(829 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0202 - 13762042-13762572 31 1.5
09_01_0016 - 376742-376883,377973-378964 30 2.0
09_04_0745 + 19884868-19886000,19886110-19886309,19886422-198866... 30 2.6
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 3.4
12_02_0299 - 17051570-17052474,17053542-17053755 29 4.5
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 4.5
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 29 4.5
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 29 4.5
10_06_0152 - 11280532-11281427,11281501-11281971,11282512-11282569 29 6.0
04_04_0887 + 29095087-29096166 28 7.9
04_01_0500 - 6540769-6541482,6541819-6541877,6541965-6542064,654... 28 7.9
02_05_0686 - 30900748-30902167,30903442-30904742 28 7.9
02_05_0149 + 26290236-26290880 28 7.9
01_05_0501 + 22764978-22765896,22766087-22766349,22766613-227668... 28 7.9
>01_03_0202 - 13762042-13762572
Length = 176
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = +1
Query: 628 FFXPGGXGGXXGGGGXXKNXXPRGAFLGA 714
FF PGG GG GGGG N RG+ GA
Sbjct: 87 FFGPGGGGGGGGGGGWWWN---RGSGSGA 112
>09_01_0016 - 376742-376883,377973-378964
Length = 377
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/27 (59%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 716 GAP-KKAPRGXXFFXXPPPPXXPPXPP 639
GAP KKAP F PPPP PP PP
Sbjct: 49 GAPTKKAP-----FVAPPPPPPPPPPP 70
>09_04_0745 +
19884868-19886000,19886110-19886309,19886422-19886666,
19886880-19887668
Length = 788
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -3
Query: 734 TXXXLGGAPKKAPRGXXFFXXPPPPXXPPXPP 639
T G K+AP PPPP PP PP
Sbjct: 245 TIHEAGAEDKRAPPPQSVRPPPPPPPPPPPPP 276
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.5 bits (63), Expect = 3.4
Identities = 25/93 (26%), Positives = 30/93 (32%), Gaps = 1/93 (1%)
Frame = -2
Query: 672 PPPPXXAPRPPXXKKFXQXXXPXXXKIFXXPXXXXGXFXXPXXLEKFXFPPXGL*XXXGX 493
PPPP P PP +F P + P + P PP G+
Sbjct: 55 PPPPPPGPPPPHQPQFNFGPGPPQQQ---QPPPPPQMYYQPPPPP----PPYGVNSSQPP 107
Query: 492 FPPXXPP-PXXGXFPKXPXXPFXPXXRFXKXXP 397
PP PP P P P P P R + P
Sbjct: 108 PPPPPPPSPPPSAPPPPPPPPTQPPPREAQLAP 140
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -3
Query: 710 PKKAPRGXXFFXXPPPPXXPPXPP 639
P P G PPPP PP PP
Sbjct: 94 PPPPPYGVNSSQPPPPPPPPPSPP 117
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 29.1 bits (62), Expect = 4.5
Identities = 31/121 (25%), Positives = 32/121 (26%), Gaps = 1/121 (0%)
Frame = -2
Query: 681 FXXPPPPXXAPRPPXXKKFXQXXXPXXXKIFXXPXXXXGXFXXPXXLEKFXFPPXGL*XX 502
F PPPP P P F P F P P F FP
Sbjct: 231 FLTPPPPPFLPFPLPPIPFLTPPSPPPPA-FPFPLPPWPWAPPPA----FPFPHLPPIFS 285
Query: 501 XGXFPPXXPPPXXGXFPKXPXXP-FXPXXRFXKXXPXXXXXXXPXGXPFXXKXXXXXXLX 325
PP PP FP+ P P F P F P P F L
Sbjct: 286 PPSPPPPPPPAFPFPFPQLPPLPHFPPLPSFYPSPPPPPPPPPPPPPSFPWPFPPLAPLF 345
Query: 324 P 322
P
Sbjct: 346 P 346
Score = 28.3 bits (60), Expect = 7.9
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3
Query: 683 FFXXPPPPXXPPXPP 639
F+ PPPP PP PP
Sbjct: 316 FYPSPPPPPPPPPPP 330
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = -1
Query: 784 PXPPXGGXXGXXFXXTPPXXDXXXXXXXXXGAXXFXKXPPPPXGPPXPXGEK 629
P PP G PP GA K PPPP PP P +
Sbjct: 651 PPPPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANR 702
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -3
Query: 719 GGAPKKAPRGXXFFXXPPPPXXPPXPP 639
GG P G PPPP PP PP
Sbjct: 533 GGGIAIGPLGEEGLVGPPPPPPPPPPP 559
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 713 APKKAPRGXXFFXXPPPPXXPPXPP 639
AP P G PPPP PP PP
Sbjct: 253 APGTLPNGSGGPPRPPPPQVPPPPP 277
>10_06_0152 - 11280532-11281427,11281501-11281971,11282512-11282569
Length = 474
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 716 GAPKKAPRGXXFFXXPPPPXXPPXPP 639
GA + + F PPPP PP PP
Sbjct: 307 GALGASSKNANMFPPPPPPPPPPVPP 332
>04_04_0887 + 29095087-29096166
Length = 359
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3
Query: 704 KAPRGXXFFXXPPPPXXPPXPP 639
K+PR F PPPP PP P
Sbjct: 122 KSPRRGNHFSPPPPPPPPPPLP 143
>04_01_0500 -
6540769-6541482,6541819-6541877,6541965-6542064,
6542113-6542322,6542507-6542765,6544022-6544215
Length = 511
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 707 KKAPRGXXFFXXPPPPXXPPXPPG 636
+K P+G PPPP PP PPG
Sbjct: 19 EKGPQGERGAGEPPPPL-PPPPPG 41
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 670 PPPPXGPPXPXGEKIXPXXXP 608
PPPP GPP P K P P
Sbjct: 338 PPPPKGPPPPPPAKGPPPPPP 358
>02_05_0149 + 26290236-26290880
Length = 214
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 640 GGXGGXXGGGGXXKNXXPRGAFLG 711
GG GG GGG N RG+F G
Sbjct: 177 GGYGGDYGGGDVGANWSKRGSFRG 200
>01_05_0501 +
22764978-22765896,22766087-22766349,22766613-22766836,
22767419-22767749,22767968-22768372
Length = 713
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -3
Query: 707 KKAPRGXXFFXXPPPPXXPPXPP 639
++ P G PPPP PP PP
Sbjct: 64 QQPPAGIAVHPSPPPPPPPPPPP 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,916,464
Number of Sequences: 37544
Number of extensions: 286953
Number of successful extensions: 3406
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2416
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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