Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_L13
(829 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 33 0.19
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 33 0.19
Z72502-7|CAA96592.1| 140|Caenorhabditis elegans Hypothetical pr... 26 0.66
U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical p... 29 5.4
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 28 7.1
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 7.1
Z46791-2|CAA86756.1| 283|Caenorhabditis elegans Hypothetical pr... 28 9.4
U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (gr... 28 9.4
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 9.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 9.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 9.4
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 33.5 bits (73), Expect = 0.19
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 719 GGAPKKAPRGXXFFXXPPPPXXPPXPPG 636
G P P+G ++ PPPP P PPG
Sbjct: 677 GQGPPPPPQGQQYYGGPPPPGQPYGPPG 704
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 33.5 bits (73), Expect = 0.19
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 719 GGAPKKAPRGXXFFXXPPPPXXPPXPPG 636
G P P+G ++ PPPP P PPG
Sbjct: 677 GQGPPPPPQGQQYYGGPPPPGQPYGPPG 704
>Z72502-7|CAA96592.1| 140|Caenorhabditis elegans Hypothetical
protein C08B6.10 protein.
Length = 140
Score = 25.8 bits (54), Expect(2) = 0.66
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -1
Query: 676 KXPPPPXGPPXP 641
+ PPPP GPP P
Sbjct: 118 RRPPPPWGPPPP 129
Score = 24.6 bits (51), Expect(2) = 0.66
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 667 PPPXGPPXPXG 635
PPP GPP P G
Sbjct: 126 PPPPGPPPPFG 136
>U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical
protein T19A5.3a protein.
Length = 715
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 640 GGXGGXXGGGGXXKNXXPRGAFLGAPPS 723
GG GG GGGG + P G +PPS
Sbjct: 491 GGGGGFGGGGGGFGSGSPFGGAAPSPPS 518
>Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical
protein F47B8.13 protein.
Length = 245
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 640 GGXGGXXGGGGXXKNXXPRGAFLGAPP 720
GG GG GGGG + GA + APP
Sbjct: 13 GGGGGGGGGGGGGEAGYSGGAGVEAPP 39
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 716 GAPKKAPRGXXFFXXPPPPXXPPXPPG 636
G P K +G PP P PP PPG
Sbjct: 242 GRPGKNAQGGSSRPGPPGPAGPPGPPG 268
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -3
Query: 737 PTXXXLGGAPKKAPRGXXFFXXPPPPXXPP 648
P L GAP P PPPP PP
Sbjct: 567 PLPQNLSGAPPPPPPPPPMLGGPPPPPPPP 596
>Z46791-2|CAA86756.1| 283|Caenorhabditis elegans Hypothetical
protein C09G5.3 protein.
Length = 283
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 676 KXPPPPXGPPXPXGEK 629
K PP P GPP P GE+
Sbjct: 135 KCPPGPRGPPGPQGEE 150
>U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (grd
related) protein 9 protein.
Length = 318
Score = 27.9 bits (59), Expect = 9.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 695 RGXXFFXXPPPPXXPPXPP 639
+G + PPPP PP PP
Sbjct: 126 QGPQYIEAPPPPPSPPPPP 144
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -2
Query: 525 PPXGL*XXXGXFPPXXPPPXXGXFPKXPXXP 433
PP GL G PP PPP G P P P
Sbjct: 747 PPGGLPPISGG-PPPPPPPPGGCPPPPPPPP 776
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -2
Query: 525 PPXGL*XXXGXFPPXXPPPXXGXFPKXPXXP 433
PP GL G PP PPP G P P P
Sbjct: 747 PPGGLPPISGG-PPPPPPPPGGCPPPPPPPP 776
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -2
Query: 525 PPXGL*XXXGXFPPXXPPPXXGXFPKXPXXP 433
PP GL G PP PPP G P P P
Sbjct: 330 PPGGLPPISGG-PPPPPPPPGGCPPPPPPPP 359
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,477,829
Number of Sequences: 27780
Number of extensions: 185792
Number of successful extensions: 1893
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1610
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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