Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_L04
(826 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999... 33 0.28
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 31 1.1
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 30 1.9
03_04_0006 + 16257288-16259522 30 2.6
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 30 2.6
06_03_0854 + 25400855-25403741,25406174-25407708 29 4.5
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 5.9
05_01_0166 + 1145829-1145971,1146211-1146235,1147330-1147425,114... 29 5.9
09_04_0706 + 19627024-19627380,19629945-19629976,19630657-196307... 28 7.8
>01_06_0116 -
26595570-26596607,26596964-26598353,26599386-26599923,
26600562-26601453
Length = 1285
Score = 33.1 bits (72), Expect = 0.28
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -1
Query: 742 PPQSNSPPGSVXEPDHAGVLNG-DERFRHVT--TXHAWNETPCARRYYRPRTASAQ 584
PP + GS + +G L+ ER RH + T HA E P R RPRT+S +
Sbjct: 450 PPSAREQRGSADKSSGSGRLDALVERMRHGSKLTDHAKREIPYDERNIRPRTSSGR 505
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 326 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSL 472
G+ PR + D EW N PT+ ++ + +PRE Q+ K + L
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFIL 1441
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -1
Query: 778 AALDTWLFLTDVPPQSNSPPGSVXEPDHAGVLNGDE 671
+A DTW P +NS P +V +PD +LNGDE
Sbjct: 733 SAGDTW------PTSNNSVPQNVDQPDSKKMLNGDE 762
>03_04_0006 + 16257288-16259522
Length = 744
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -3
Query: 533 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 381
A+RSP Y T L + ARL T PA SP +AV S + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 350 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 249
LDDE YL R V + RLL+F++VD STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 533 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 408
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 655 TTXHAWNETPCARRYY 608
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>05_01_0166 +
1145829-1145971,1146211-1146235,1147330-1147425,
1147544-1147645,1147767-1147889,1147996-1148622,
1148710-1148883,1148965-1149181,1149312-1149394,
1149478-1149573,1149676-1149724,1149850-1150088,
1150547-1150618,1150694-1150804,1150930-1151282,
1151377-1151464,1151691-1151789,1151860-1151991,
1152119-1152222,1153179-1153215,1153334-1153367,
1153451-1153467
Length = 1006
Score = 28.7 bits (61), Expect = 5.9
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -3
Query: 779 SCLRHLVIFDRCTAPVKLPAW 717
SC + L++F++C+ P +L W
Sbjct: 203 SCFKTLLLFEKCSVPYRLALW 223
>09_04_0706 +
19627024-19627380,19629945-19629976,19630657-19630751,
19632116-19632281,19632881-19632938,19633014-19633061,
19633274-19633464,19633580-19633702,19635174-19635289,
19635841-19635924,19636009-19636259,19636438-19636647
Length = 576
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 532 ARLSLKNHYFHCFITYSVGRKRCAVDNI 615
+RLSLK H CF YS+ RK C N+
Sbjct: 121 SRLSLK-HLLRCFDFYSIDRKFCNGTNL 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,271,316
Number of Sequences: 37544
Number of extensions: 502553
Number of successful extensions: 1528
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1526
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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