Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_L03
(815 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0456 + 29521282-29522064 33 0.36
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 32 0.63
02_05_0386 - 28530882-28531172,28531261-28531413,28531500-28532483 31 0.83
01_01_0613 - 4571689-4572348 31 1.1
03_04_0006 + 16257288-16259522 30 2.5
06_03_1448 + 30235336-30236763 29 3.3
06_03_1443 + 30182018-30183445 29 3.3
06_03_1440 + 30166515-30167942 29 3.3
06_03_1437 + 30151030-30152457 29 3.3
06_03_1429 + 30100834-30102261 29 3.3
06_03_1425 + 30084383-30085810 29 3.3
06_03_1420 - 30053713-30055140 29 3.3
05_05_0272 - 23738514-23738817,23739382-23740748 29 3.3
02_05_1139 - 34381575-34381878,34382181-34382865,34383479-34383881 29 3.3
06_03_0854 + 25400855-25403741,25406174-25407708 29 4.4
12_02_0046 + 12830974-12832386 29 5.8
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 5.8
12_01_0366 + 2779754-2779882,2780007-2780047,2780163-2780212,278... 28 7.7
>01_06_0456 + 29521282-29522064
Length = 260
Score = 32.7 bits (71), Expect = 0.36
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = -1
Query: 650 SPAWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 522
S AW+C P +G+RG +RRR P S R R +T+RP + S A
Sbjct: 10 SRAWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 31.9 bits (69), Expect = 0.63
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 242 DENSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSL 394
D+ + PR + D EW N PT+ ++ + +PRE Q+ K + L
Sbjct: 1391 DQGNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFIL 1441
>02_05_0386 - 28530882-28531172,28531261-28531413,28531500-28532483
Length = 475
Score = 31.5 bits (68), Expect = 0.83
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +1
Query: 4 WLAQ*SSGKGVDQARLFLPRSSLPWLPLYLTSETDIKHLLIQ 129
WLA ++ +GV+Q L LPRS L LP L + T++ L ++
Sbjct: 139 WLAA-AAARGVEQLELHLPRSRLALLPPSLIACTNLTSLTLR 179
>01_01_0613 - 4571689-4572348
Length = 219
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = -3
Query: 705 LALGHLRYSLTDVPPPVKLPRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIID 526
L LGH YSL +PPP P + N ++ ++S SA + +G + R+ +++D
Sbjct: 51 LELGHSVYSL-PLPPPPSQPVVVAGGN--NDQYGVSSSSSAAATTSRIGFRTRSEVEVLD 107
>03_04_0006 + 16257288-16259522
Length = 744
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -1
Query: 455 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 303
A+RSP Y T L + ARL T PA SP +AV S + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215
>06_03_1448 + 30235336-30236763
Length = 475
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 649 PPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 512
PPP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 649 PPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 512
PPP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 649 PPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 512
PPP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 649 PPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 512
PPP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 649 PPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 512
PPP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 649 PPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 512
PPP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 649 PPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 512
PPP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>05_05_0272 - 23738514-23738817,23739382-23740748
Length = 556
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -3
Query: 696 GHLRYS-LTDVPPPVKLPRLAVSSNRITREF*TATSVSATSPLCTLGTKH 550
G RY+ +TDVPP V P L V N IT EF T + +P ++ + H
Sbjct: 398 GVFRYNQMTDVPPAVNGP-LHVVPNVITAEFRTFIEIIFENPEKSMDSVH 446
>02_05_1139 - 34381575-34381878,34382181-34382865,34383479-34383881
Length = 463
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -2
Query: 673 RCTAPSQTPPPGSVLEPDHAGVLNGDERFRHVTTLHAW 560
RC+APS TP P + P H G R T H W
Sbjct: 37 RCSAPSSTPAPSAAAAPSHLAA-GGSPRVG--TAEHDW 71
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 455 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 330
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>12_02_0046 + 12830974-12832386
Length = 470
Score = 28.7 bits (61), Expect = 5.8
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = -3
Query: 732 PREVSVXAELALGHLRYSLTDVPPP--VKLPRLAVSSNRITREF*TATSVSATSPLCTLG 559
PR+V V + L+ VP P K R VS++ R+ + + SA P C
Sbjct: 260 PRQVPVITQQQAPPLKRPAPPVPSPPCAKKIRGPVSASPAARQ--SCVAASAPPPWCVPP 317
Query: 558 TKHRAPADIIDRAPLPP 508
AP APLPP
Sbjct: 318 PPRPAPPSRRVMAPLPP 334
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 577 TTLHAWNETPCARRYY 530
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>12_01_0366 +
2779754-2779882,2780007-2780047,2780163-2780212,
2780824-2780968,2781298-2781354,2781448-2781571,
2781798-2782259,2782493-2782564
Length = 359
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 45 PSVSSPEL-APLASLIFNIRNRH*TSTDPISPAYGH 149
PS SS L AP +S + H TS D PAYGH
Sbjct: 260 PSSSSASLVAPASSFMPTASPFHPTSADAHRPAYGH 295
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,852,012
Number of Sequences: 37544
Number of extensions: 597205
Number of successful extensions: 1901
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1899
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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