Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_K19
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.3  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/49 (30%), Positives = 15/49 (30%)
 Frame = +3

Query: 573 PPXXXARGXXXPXGXPXXPPXXXPAGPAXXPXPXGXXGAXXXXPXXASP 719
           PP         P   P  PP     GP   P P G  GA    P    P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +3

Query: 357 GXXXPPPPPXGGXPXXPPPXXXXXXXXXXGG 449
           G   PPPPP G     PPP          GG
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 369 PPPPPXGGXPXXPPP 413
           PPP P  G P  PPP
Sbjct: 752 PPPAPIMGGPPPPPP 766


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 357 GXXXPPPPPXGGXPXXPPP 413
           G   PPPPP G  P   PP
Sbjct: 7   GNPPPPPPPPGFEPPSQPP 25



 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 369 PPPPPXGGXPXXPPP 413
           PPPPP    P  PPP
Sbjct: 12  PPPPPGFEPPSQPPP 26


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 22/85 (25%), Positives = 22/85 (25%), Gaps = 2/85 (2%)
 Frame = -2

Query: 841 GGGXXXXGXXXGWGXPXXXGXXXXXEXGGXXXXRXXXXXXRGE--AXXGXXXXAPXXPXG 668
           GGG    G   G   P   G       GG            G      G        P G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246

Query: 667 XGXXAGPAGXXXGGXXGXPXGXXXP 593
            G   G  G   GG  G P G   P
Sbjct: 247 FGGGLGGFGGGPGGFGGGPGGHGGP 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,901,139
Number of Sequences: 5004
Number of extensions: 27037
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)