Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_K14
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.47 
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.3  
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc...    27   3.3  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    27   4.3  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    26   5.7  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   7.6  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   7.6  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 238 VRVHRADTGRSSNELDRQTTELERR 312
           +R H+   GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 161 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 63
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 379 AVPRQASTSVXEDTSQVLQPHSPCVPTQS 293
           +V R A+++V   +  +L  H+ CVP QS
Sbjct: 243 SVRRNANSTVKPTSKDILALHAECVPAQS 271


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 247 HRADTGRSSNELDRQTTELERRVNGAAALGWCPRERLWR 363
           H  D  +     D   + L R +NGA+AL     +RLWR
Sbjct: 62  HFNDNEKIHKRQDSINSWLTRTLNGASALQMKAAQRLWR 100


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 307 VPTQSFVDPIHLKICQYPHGGL 242
           +P Q+F    H+++C YP GG+
Sbjct: 153 IPQQNFT---HVRLCMYPDGGI 171


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = -3

Query: 224 HVSNAGSG*LRFWSTGGDSRSYVARSESIMR----DSDVAFSHSAALAIAQVRRNGNKNN 57
           H+S    G  R ++ GG   SY A+   + R    D+ V ++ SAAL +  + R  + ++
Sbjct: 433 HLSGMTMGMRRMFTQGG---SYSAQERGLCRLEQKDTVVRYAQSAALYLIFLLRRPSADS 489

Query: 56  ISRRH 42
             RRH
Sbjct: 490 GIRRH 494


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = -3

Query: 224 HVSNAGSG*LRFWSTGGDSRSYVARSESIMR----DSDVAFSHSAALAIAQVRRNGNKNN 57
           H+S    G  R ++ GG   SY A+   + R    D+ V ++ SAAL +  + R  + ++
Sbjct: 433 HLSGMTMGMRRMFTQGG---SYSAQERGLCRLEQKDTVVRYAQSAALYLIFLLRRPSADS 489

Query: 56  ISRRH 42
             RRH
Sbjct: 490 GIRRH 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,825
Number of Sequences: 5004
Number of extensions: 42874
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)