Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_K08
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.28 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 17/43 (39%), Positives = 17/43 (39%)
 Frame = +3

Query: 120 GPPXNQXXPPXGXXGXXPPXPXTXXPPPPXFXKXGKXXGGPXP 248
           GPP     PP G  G  PP P    PPPP     G     P P
Sbjct: 760 GPPP--PPPPPGVAGAGPPPP---PPPPPAVSAGGSRYYAPAP 797



 Score = 29.9 bits (64), Expect = 0.50
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +3

Query: 171 PPXPXTXXPPPPXFXKXGKXXGGPXPPP 254
           PP P    PPPP     G    GP PPP
Sbjct: 753 PPAPIMGGPPPPP-PPPGVAGAGPPPPP 779



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 18/61 (29%), Positives = 20/61 (32%)
 Frame = +3

Query: 102 EKXXIXGPPXNQXXPPXGXXGXXPPXPXTXXPPPPXFXKXGKXXGGPXPPPGGXXAXGLX 281
           +K  +  PP     PP        P P    PP P         GGP PPP      G  
Sbjct: 725 QKLLLKSPPP---PPPAVIVPTPAPAPIPVPPPAPIM-------GGPPPPPPPPGVAGAG 774

Query: 282 P 284
           P
Sbjct: 775 P 775



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
 Frame = -2

Query: 298 PXXFXGXXPXAXXPPG-GGXGPPXIXPXXXKXGGGG 194
           P    G  P    PPG  G GPP   P       GG
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +3

Query: 171 PPXPXTXXPPPPXFXKXGKXXGGPXPPPG 257
           PP      PPPP F    +    P PPPG
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPP--PPPPPG 31



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = +3

Query: 123 PPXNQXXPPXGXXGXXPPXPXTXXPPPPXFXKXGK 227
           PP N   PP    G  PP      PPPP + K  K
Sbjct: 5   PPGNPPPPPP-PPGFEPPSQPP-PPPPPGYVKKRK 37


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/44 (29%), Positives = 13/44 (29%)
 Frame = +3

Query: 123  PPXNQXXPPXGXXGXXPPXPXTXXPPPPXFXKXGKXXGGPXPPP 254
            P   Q   P       PP P    PPPP             PPP
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,450,123
Number of Sequences: 5004
Number of extensions: 15822
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)