Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_K03
(793 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0907 - 22490158-22490555,22490647-22491250 30 2.4
06_02_0064 + 11062798-11063568,11064212-11064261,11064354-110645... 30 2.4
01_05_0606 - 23607170-23607568,23607738-23607941,23608035-236081... 29 3.2
05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722 29 4.2
03_03_0219 - 15519076-15520050,15520376-15520579,15520755-155207... 29 4.2
01_06_1313 - 36212524-36213669 29 4.2
07_03_1096 + 23931862-23931931,23932406-23932549,23932888-239329... 28 7.4
05_05_0029 + 21694448-21694567,21694666-21695117,21695214-216955... 28 7.4
01_01_1084 - 8521796-8522389,8522503-8522983,8523084-8523190 28 7.4
12_01_1065 + 10983528-10983992,10985240-10985293 28 9.8
>07_03_0907 - 22490158-22490555,22490647-22491250
Length = 333
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +1
Query: 160 PARARYNEDMQTWQ---GRTETGSEGGEPLPP 246
P AR+ + TW+ GR ++GS GGE PP
Sbjct: 231 PPLARHLKKSDTWETRPGRRQSGSGGGEDAPP 262
>06_02_0064 + 11062798-11063568,11064212-11064261,11064354-11064510,
11064598-11064816,11065301-11065429,11066502-11068031,
11068654-11069013,11069086-11069205,11069727-11069897,
11070022-11070180,11070327-11070452,11070660-11070968
Length = 1366
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 544 SISVIASA-SPNRPPTNLLTILDTEPQTGIEETL 642
S S SA S + PP+N+ +D PQ GI+ETL
Sbjct: 917 STSTYNSADSSHEPPSNVNPPIDNVPQVGIQETL 950
>01_05_0606 -
23607170-23607568,23607738-23607941,23608035-23608113,
23608371-23608430,23608514-23608611,23608703-23608891,
23610670-23611368
Length = 575
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 217 GSEGGEPLPPANIPIDAVWQPVAGTR 294
G G EP PP P +++W P+ R
Sbjct: 106 GDNGDEPRPPTVAPAESLWAPIGWRR 131
>05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722
Length = 740
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -2
Query: 411 GEPQAADDGVGSARFCRCDYSHHGYRPTFHVSRINVKPKSSTGDWLPNCINGY 253
G +++D G G C Y H+ P+ SR + PKS +W +C + +
Sbjct: 462 GVDESSDGGPGY-HVNACSYEHYINTPSV-ASRSSDTPKSKVSEWSSSCFHNH 512
>03_03_0219 -
15519076-15520050,15520376-15520579,15520755-15520791,
15522025-15522104
Length = 431
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 268 VWQPVAGTRFRFYVYSAYVERRTVA 342
VWQPVA TRFR + + + R +A
Sbjct: 74 VWQPVAQTRFRVFKHENGIAVRVIA 98
>01_06_1313 - 36212524-36213669
Length = 381
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = -3
Query: 548 MDPPTVSCGFTPESFSKHRTYVALYFKFQFSLIALTRALSVSV 420
M PPT S SF HR+ V +F L+A AL V V
Sbjct: 233 MAPPTFSTEEEKSSFEIHRSGVVTFFAVFSMLVATAMALLVKV 275
>07_03_1096 +
23931862-23931931,23932406-23932549,23932888-23932986,
23933422-23933498,23933813-23933921,23934973-23935301,
23935838-23935930
Length = 306
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 590 LVGGRFGEALAMTDMDPPTVSCGFTPESFSKHRTYVALYF 471
L+ +FG+ L D+D SCG + S HRT +++Y+
Sbjct: 268 LINKKFGKQLLSIDIDLWLWSCGVQNMALSHHRT-LSIYY 306
>05_05_0029 +
21694448-21694567,21694666-21695117,21695214-21695529,
21695863-21697122
Length = 715
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -2
Query: 402 QAADDGVGSARFCRCDYSHHGYRPTFHVSRINVKPKSSTGDWLPNCINGY 253
+++D G G C Y H+ P+ SR + PKS +W +C + +
Sbjct: 440 ESSDSGPGY-HVNACSYEHYINTPSV-ASRSSDTPKSKVSEWSSSCFHNH 487
>01_01_1084 - 8521796-8522389,8522503-8522983,8523084-8523190
Length = 393
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 366 CRCDYSHHGYRPTFHVSRINVKPKSSTGDWL 274
C CD HH P SR+ + + S G WL
Sbjct: 291 CHCDDHHHHLLPLVFHSRMGLCVQISRGHWL 321
>12_01_1065 + 10983528-10983992,10985240-10985293
Length = 172
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 750 VHVKSDWPPSKRLNSNHFDKPFVPRVRIMERFHADVQCFLNSSLW 616
VH D P S R NH V ++ERFH ++ +SS+W
Sbjct: 76 VHHTQDTPVSHRSAGNH-------AVGLLERFHGELSSSNSSSVW 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,215,068
Number of Sequences: 37544
Number of extensions: 519102
Number of successful extensions: 1648
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1648
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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