Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_K03
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.9  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.9  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.9  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   9.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.9  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   9.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.9  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/44 (22%), Positives = 24/44 (54%)
 Frame = +1

Query: 463  WNLKYSATYVLCLLKDSGVKPQETVGGSISVIASASPNRPPTNL 594
            +NL+ + TY L ++ ++ +   +       + A  +P+ PPT++
Sbjct: 940  FNLRPATTYHLRIVAENEIGASDPSDTVTIITAEEAPSGPPTSI 983


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 537 RRIHISHRKCFTE 575
           RRI I+H  C TE
Sbjct: 37  RRIEIAHALCLTE 49


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 537 RRIHISHRKCFTE 575
           RRI I+H  C TE
Sbjct: 37  RRIEIAHALCLTE 49


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 537 RRIHISHRKCFTE 575
           RRI I+H  C TE
Sbjct: 37  RRIEIAHALCLTE 49


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 679 RDEWLVEMVRIQSFAG 726
           R++WL E +R   F G
Sbjct: 87  REQWLDERLRFNDFGG 102


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 679 RDEWLVEMVRIQSFAG 726
           R++WL E +R   F G
Sbjct: 87  REQWLDERLRFNDFGG 102


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 330 SDGSRGANNRSDKNARSRPRH 392
           S GSR  +N  +KN R+  R+
Sbjct: 46  SQGSRTTHNELEKNRRAHLRN 66


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 537 RRIHISHRKCFTE 575
           RRI I+H  C TE
Sbjct: 299 RRIEIAHALCLTE 311


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 130 ELLLLER-PNEPARARYNEDMQTWQG 204
           ++LLLE  P+EPA A    ++Q + G
Sbjct: 94  KVLLLEAGPDEPAGAEIPSNLQLYLG 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,307
Number of Sequences: 438
Number of extensions: 5639
Number of successful extensions: 31
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)