Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_K02
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 268 4e-72
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 266 1e-71
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847... 32 0.58
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 30 2.4
05_04_0324 - 20273797-20274261 29 4.1
01_06_1521 + 37956131-37957204,37958560-37958962,37959370-379594... 29 5.4
01_05_0125 - 18382402-18382761,18382863-18383036 28 7.2
05_04_0394 - 20906923-20907146,20907251-20907340,20908380-209087... 28 9.5
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 268 bits (656), Expect = 4e-72
Identities = 128/247 (51%), Positives = 166/247 (67%), Gaps = 2/247 (0%)
Frame = +2
Query: 38 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 217
MSHRKF PRHGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREV 60
Query: 218 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 397
++PGSK++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120
Query: 398 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIXHTQM-XXXXXXXXXXH 574
NW + + G+K I+ +KM +Y S+VRVI HTQ+ H
Sbjct: 121 NWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAH 180
Query: 575 IMEIQLNGGTIXDKVKWGKXHLXKPXPVXSGFAQMK-**LXGXXQGQRIQXXPSPWAPXX 751
+MEIQ+NGGTI DKV +G K PV + F + + + G +G+ + + W
Sbjct: 181 LMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 752 LPXKNPR 772
LP K R
Sbjct: 241 LPRKTHR 247
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 266 bits (653), Expect = 1e-71
Identities = 128/247 (51%), Positives = 166/247 (67%), Gaps = 2/247 (0%)
Frame = +2
Query: 38 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 217
MSHRKF PRHGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREV 60
Query: 218 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 397
++PGSK++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120
Query: 398 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIXHTQM-XXXXXXXXXXH 574
NW + + G+K I+ +KM +Y SVVRVI HTQ+ H
Sbjct: 121 NWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAH 180
Query: 575 IMEIQLNGGTIXDKVKWGKXHLXKPXPVXSGFAQMK-**LXGXXQGQRIQXXPSPWAPXX 751
+MEIQ+NGGTI DKV +G K PV + F + + + G +G+ + + W
Sbjct: 181 LMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 752 LPXKNPR 772
LP K R
Sbjct: 241 LPRKTHR 247
>01_06_0083 +
26283492-26283756,26284255-26284467,26284620-26284771,
26284884-26285157,26285277-26285485
Length = 370
Score = 31.9 bits (69), Expect = 0.58
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 472 NRKRFQEDDPLL*CCKSHXPHSNEAVKTATKEGSHYGNP 588
N +RF +DPLL CC H P+ A T + + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 29 SSSMSHRKFSAPRHGSM-GFYPKKRSRRHRGKVKAFPKDDPSKPVHLT 169
S+S+ H + P+ S+ G P +++ + KVK K P VH+T
Sbjct: 237 STSLEHSESPPPKRKSLDGRTPASSTKKGKKKVKFVDKKHPENAVHIT 284
>05_04_0324 - 20273797-20274261
Length = 154
Score = 29.1 bits (62), Expect = 4.1
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +2
Query: 131 FPKDDPSKPVHLTAFIGYKAGMTHVVRE--PDRPGSKINKKEIVEAVTIIETPPMVCVGV 304
FP D+P K VH+ G + +T ++ E P + +N EA + P CVGV
Sbjct: 60 FPPDNPQKFVHVHRVFG-ASNVTKLLNELHPYQREDAVNSL-AYEADMRLRDPVYGCVGV 117
Query: 305 VGYIETPHGLRAL 343
+ ++ H LR L
Sbjct: 118 ISVLQ--HQLRQL 128
>01_06_1521 +
37956131-37957204,37958560-37958962,37959370-37959471,
37959569-37959792
Length = 600
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 20 CDLSSSMSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDD 145
CD+ +S +H+ PR G + F K RR G ++D
Sbjct: 367 CDVVTSTTHKNLRGPRGGIIFFRRGKNLRRRTGSFSQADEND 408
>01_05_0125 - 18382402-18382761,18382863-18383036
Length = 177
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 386 DVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSE 282
++ +L PPR ST R+V E C+ + R + +E
Sbjct: 47 ELGALLPNLPPRASTTRIVEEAIACVGELRARTAE 81
>05_04_0394 -
20906923-20907146,20907251-20907340,20908380-20908785,
20909264-20910247
Length = 567
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +2
Query: 20 CDLSSSMSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDD 145
CD+ +S +H+ PR G + F K R+ G + ++D
Sbjct: 337 CDIVTSTTHKSLRGPRGGIIFFRKGKNLRKRVGSLTQVVEND 378
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,183,200
Number of Sequences: 37544
Number of extensions: 416778
Number of successful extensions: 893
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -