Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_J22
(1041 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 30 0.23
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.47
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 5.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 5.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 5.8
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 5.8
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 5.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 7.6
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 30.3 bits (65), Expect = 0.47
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 854 PPPPPPPPXXXGGGGG 807
PPPPPPPP GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
Score = 26.2 bits (55), Expect(2) = 0.23
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -2
Query: 851 PPPPPPPXXXGGGGGG 804
PPPPPPP GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
Score = 23.4 bits (48), Expect(2) = 0.23
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 854 PPPPPPPP 831
P PPPPPP
Sbjct: 905 PTPPPPPP 912
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.3 bits (65), Expect = 0.47
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -3
Query: 853 PPPPPPPPXXXGGG 812
PPPPPPPP G G
Sbjct: 761 PPPPPPPPGVAGAG 774
Score = 30.3 bits (65), Expect = 0.47
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 854 PPPPPPPPXXXGGGG 810
PPPPPPPP GG
Sbjct: 775 PPPPPPPPPAVSAGG 789
Score = 28.3 bits (60), Expect = 1.9
Identities = 13/43 (30%), Positives = 13/43 (30%)
Frame = +1
Query: 715 PPPPPXXXXXXXXXXXXXXKKXXXXXXXXXPPPPPPXXXGGGG 843
PPPPP PPPPPP G G
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG 774
Score = 27.5 bits (58), Expect = 3.3
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -3
Query: 850 PPPPPPPXXXGGGG 809
PPPPPPP G G
Sbjct: 761 PPPPPPPPGVAGAG 774
Score = 27.1 bits (57), Expect(2) = 0.67
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -1
Query: 852 PPPPPPPXXXXGGGG 808
PPPPPPP GG
Sbjct: 775 PPPPPPPPPAVSAGG 789
Score = 23.8 bits (49), Expect(2) = 4.0
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3
Query: 550 PPPPPPP 530
PPPPPPP
Sbjct: 776 PPPPPPP 782
Score = 21.4 bits (43), Expect(2) = 4.0
Identities = 6/7 (85%), Positives = 7/7 (100%)
Frame = -3
Query: 553 TPPPPPP 533
+PPPPPP
Sbjct: 731 SPPPPPP 737
Score = 21.0 bits (42), Expect(2) = 0.67
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -1
Query: 855 PPPPPP 838
PPPPPP
Sbjct: 732 PPPPPP 737
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 5.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 853 PPPPPPPP 830
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 5.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 853 PPPPPPPP 830
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 5.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 854 PPPPPPPP 831
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 5.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 855 PPPPPPPP 832
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 5.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 855 PPPPPPPP 832
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 5.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 854 PPPPPPPP 831
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 5.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 855 PPPPPPPP 832
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 7.6
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 578 GXGAXXFXXPPPPPPP 531
G G+ PPPPPPP
Sbjct: 328 GNGSSNSSLPPPPPPP 343
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.157 0.540
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,028,396
Number of Sequences: 5004
Number of extensions: 24493
Number of successful extensions: 470
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 545231778
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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