Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_J19
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.75 
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1...    27   2.3  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   3.0  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   3.0  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   5.3  
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    26   7.0  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   9.3  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    25   9.3  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 4/111 (3%)
 Frame = +1

Query: 280 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPXLKIPVTVDLCWTTADVT 459
           T T   S  +T  +    +S+   Y    + +    +  S P    PVT   C T+  V 
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539

Query: 460 VEGVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 600
                V +TP ++       ++ + +T      Y      P+  +P+  TN
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 590



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 6/109 (5%)
 Frame = +1

Query: 292 TKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFPSAPXLKIPVTVDLCWTTADVTVE 465
           T +N  T  S+P  S+ +              +V + S P    P+T   C T+  +   
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482

Query: 466 GVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 600
              V +TP ++       ++ + +T      Y      P+  +P+  TN
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 531


>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 527 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 408
           I A P   +R     AS+ TP+  T+A+ QQ     GI+R
Sbjct: 9   IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 262  RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 375
            R+Y  L  T   ++S    + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +1

Query: 343 IKGYRDAYLVNLEAVVFPSAPXLKIPVTVD 432
           +K  RD YL NLEA  FPS+  +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = +2

Query: 431 TFVGLLLTSQLKESMCWPPLHPLALLSAVSPLCIKPPSPAISATS 565
           TF+ ++ TS++K++  +PP +P     +VS    + P+ +IS+ S
Sbjct: 106 TFLPVIETSKVKDANHFPPNYPEPKNDSVSSNIDEFPNDSISSAS 150


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 102 GVWKKRKH*PRREWPKRQKRXKAQF 28
           G WKK +   + EW K ++  KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 482 PPLHPLALLSAVSPLCIKPPSPAISAT 562
           PP  P A ++A +P    PP P +  T
Sbjct: 908 PPPPPTASMTASAPAIASPPPPKVGET 934


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 523 LMHQATLPCDLGYINPIIKSPIPYTNHP 606
           + HQA L C  GY + +    +P+ N P
Sbjct: 348 ICHQAILRCIYGYYHNLSLEELPFINVP 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,644
Number of Sequences: 5004
Number of extensions: 52418
Number of successful extensions: 186
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)