Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_J14
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    29   0.79 
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    29   0.79 
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    28   1.8  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    28   1.8  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    27   4.2  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    27   4.2  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   4.2  
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb...    26   5.6  
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ...    26   7.4  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    26   7.4  
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac...    26   7.4  
SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|c...    26   7.4  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    25   9.7  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    25   9.7  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    25   9.7  

>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
 Frame = -2

Query: 379 RRTVMSCSFNSNRVPLPPFLARNKATAPAFSIPSSNLSI-DCDICESFASINLSRLLIRG 203
           R ++     N +R P P    R+    P+F   +S+LS+   D+     S       + G
Sbjct: 687 RESLRHSRSNMSRSPSPMLSRRSSTLRPSFERSASSLSVRQSDVVSPAPSTRARGQSVSG 746

Query: 202 SSTPSDTFSVF 170
              PS + S++
Sbjct: 747 QQRPSSSMSLY 757


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 26/101 (25%), Positives = 44/101 (43%)
 Frame = -2

Query: 427 RPTYTLICLSTAATLFRRTVMSCSFNSNRVPLPPFLARNKATAPAFSIPSSNLSIDCDIC 248
           RP++TL  LS+ A          S  S   P PP   ++ AT    S+P S    D  + 
Sbjct: 364 RPSHTLSELSSPALTSENL---SSKPSPLFPPPPPRVKSLATNKPVSMPVSTEQSDPSVA 420

Query: 247 ESFASINLSRLLIRGSSTPSDTFSVFPTTFHDAIISSPISF 125
            S +S +   ++++GS   + +    P  F + + S  + F
Sbjct: 421 ASSSSSSQLDVVLKGSIPDTSSVRRNPPCFVNGVESINVDF 461


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 26/76 (34%), Positives = 32/76 (42%)
 Frame = -2

Query: 352 NSNRVPLPPFLARNKATAPAFSIPSSNLSIDCDICESFASINLSRLLIRGSSTPSDTFSV 173
           N+N   LP    + K   P  S  S + S D  I ES  S+  SR     SS      S 
Sbjct: 186 NNNSDYLPKSAMKQKKGGPKDS--SKHPSNDGKIPESKPSVYKSRASNLFSSNEQSIHSS 243

Query: 172 FPTTFHDAIISSPISF 125
           F + FH    S+P SF
Sbjct: 244 FGSKFHFDKSSNPFSF 259


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = -2

Query: 358 SFNSNRVPLPPFLARNKATAPAFSIPSSNLSID---CDICESFASINLSRL-LIRGSSTP 191
           S  + + P P   A N  T+PA   P++  S D    D       ++ S    + GSSTP
Sbjct: 224 SSTATKGPRPTTSASNTNTSPANGAPTNKPSTDINTTDPATQTTQVSASNSPALSGSSTP 283

Query: 190 SDTFS 176
           S+T S
Sbjct: 284 SNTSS 288


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 504 QVAHPARKRHTIEQSLTTCFAPIPL 430
           ++AHP    H + QSL +CF  + L
Sbjct: 188 EIAHPPSYDHRLHQSLLSCFLVVLL 212


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = -2

Query: 274 NLSIDCDICESFASINLSRLLIRGSSTPSDTFSVFPTTFHDAIISSPISF 125
           N+S+D D   + AS  L  LL + S+ PSD  +  P+TF    + S  SF
Sbjct: 247 NISVDVD---ADASSQLLSLL-KSSTAPSDLATPQPSTFPQPPVESHSSF 292


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 20/51 (39%), Positives = 28/51 (54%)
 Frame = -2

Query: 289 SIPSSNLSIDCDICESFASINLSRLLIRGSSTPSDTFSVFPTTFHDAIISS 137
           SIPS+  S+   +  S +S + + L I  SST S TFS   T+   +I SS
Sbjct: 568 SIPSTFSSVSSILSSSTSSPSSTSLSISSSST-SSTFSSASTSSPSSISSS 617


>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -2

Query: 298 PAFSIPSSNLSIDCDICESFASINLSRLLIRGSSTPSDTFSVFPTTFHDAIISSPISFP 122
           P  S+   +++IDC+  + + S+      +   +TP+  F V+   F D     PI FP
Sbjct: 139 PIQSLGFDDVAIDCETLDPWPSMQNKATSVTIRNTPASDFHVY-KEFSD---DDPIQFP 193


>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 319 ARNKATAPAFSIPSSNLSIDCDICES 242
           A   ++AP+FS  S N S D D C S
Sbjct: 21  ASTVSSAPSFSFVSGNESADLDSCAS 46


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -2

Query: 244 SFASINLSRLLIRGSSTPS--DTFSVF--PTTFHDAIISSPISF 125
           +F  INLS  L+R SSTP+   TF  F   TT    I+S  + F
Sbjct: 452 TFGFINLSCFLLRISSTPNFRPTFRYFNRRTTLVGTILSFGVMF 495


>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 21/63 (33%), Positives = 27/63 (42%)
 Frame = -1

Query: 431 LKADVHSHLSVHCRHFVQKDRHVVQFQLKPGSSPSVLGQEQGHRTGLLYSQLQSVDRLRY 252
           L+  VH  LS  C HF +KD   +   L P     V+G E   +  LL        RLR 
Sbjct: 183 LQPIVHPILSTACNHFYEKD--AILSLLNPTCVCPVVGCEARLQRSLLKEDEILERRLRR 240

Query: 251 MRE 243
            +E
Sbjct: 241 AQE 243


>SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 147

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 372 PSCRAVSTQTGFLSLRSWPGTRPPHRPSLFPA 277
           PS    +TQ+ F ++R+W  T P  + S F A
Sbjct: 108 PSSGRFNTQSTFPTIRNWICTNPNFKLSFFSA 139


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = +3

Query: 6   EWSRVXSSCPVRFVRTILVLLAIVHNSRA--LVEVVDVLKLGKEIGEEIIASWNVVGKTL 179
           E++    S   RF+R I +LL+ V  SRA  +V+V D+     E+ + +   +     ++
Sbjct: 34  EFNENIKSVSSRFMRLIELLLSKVDRSRAEDIVDVEDIDNRWAEVSDTLDILFEKADYSI 93

Query: 180 NVSEGV 197
           + ++G+
Sbjct: 94  DKAQGL 99


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = -2

Query: 463 KPN---NVLRSNSS*RPTYTLICLSTA 392
           KPN   N + SN +  P Y+ +CLST+
Sbjct: 500 KPNTYKNTILSNENNTPNYSNVCLSTS 526


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 627 QRAHIPCXPS*TSWTICLQKA 565
           Q+AH  C  S TSW  C +K+
Sbjct: 40  QKAHADCHFSTTSWRACRKKS 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,984,433
Number of Sequences: 5004
Number of extensions: 57644
Number of successful extensions: 158
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)