Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_J14
         (815 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    25   1.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.4  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 360 AVSTQTGFLSLRSWPGTRPPHRPSLFP 280
           ++  ++G +S  S PGT   H P+ FP
Sbjct: 382 SIRNRSGLVSGSSTPGTGREHDPAKFP 408


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -2

Query: 367 MSCSFNSNRVPLPPFLARNKATAPAFSIPSSNLSIDCDICESFASINLSR 218
           +S +  S+    P   +   AT      PS+ + +  DI +S   +NLS+
Sbjct: 830 LSAAATSSTSTSPRPASSTAATLVLSGCPSNMMELQVDIADSQQPLNLSK 879


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,568
Number of Sequences: 438
Number of extensions: 4333
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)