Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_J13
(815 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 32 0.006
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 32 0.006
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 27 0.21
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.27
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.27
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 27 0.27
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 26 0.36
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 25 0.63
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.5
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.5
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.9
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.9
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.9
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.9
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.9
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.9
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 24 1.9
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 23 2.6
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 2.6
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 23 3.4
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 5.9
AB072429-1|BAB83990.1| 388|Apis mellifera IP3phosphatase protein. 22 5.9
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 22 7.8
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 22 7.8
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 32.3 bits (70), Expect = 0.006
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +2
Query: 101 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 268
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 269 IDKRLGWNAG 298
+D+RL + G
Sbjct: 62 VDRRLAFQGG 71
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 32.3 bits (70), Expect = 0.006
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = +2
Query: 95 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 259
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 260 MNWIDKRLGWNA 295
+ W L W +
Sbjct: 88 LMWEQSHLTWKS 99
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 27.1 bits (57), Expect = 0.21
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 306 GCSTWLVSSERLWRPDVVLLN 368
G T V SE +W PD+VL N
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYN 111
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 26.6 bits (56), Expect = 0.27
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 324 VSSERLWRPDVVLLN 368
V S+ +WRPD+VL N
Sbjct: 105 VPSDHIWRPDIVLYN 119
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 26.6 bits (56), Expect = 0.27
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 324 VSSERLWRPDVVLLN 368
V S+ +WRPD+VL N
Sbjct: 105 VPSDHIWRPDIVLYN 119
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 26.6 bits (56), Expect = 0.27
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 324 VSSERLWRPDVVLLN 368
V S+ +WRPD+VL N
Sbjct: 101 VPSDHIWRPDIVLYN 115
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 26.2 bits (55), Expect = 0.36
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 300 EWGCSTWL-VSSERLWRPDVVLLN 368
E+G T L V SE +W PD+VL N
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVLYN 111
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 25.4 bits (53), Expect = 0.63
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 306 GCSTWLVSSERLWRPDVVLLN 368
G V SE +W PD+VL N
Sbjct: 104 GVEMLYVPSENIWLPDIVLYN 124
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.2 bits (50), Expect = 1.5
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +2
Query: 122 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLG 286
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 287 WNAGXMG 307
WN G
Sbjct: 118 WNESEYG 124
Score = 23.4 bits (48), Expect = 2.6
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Frame = +3
Query: 279 DWVGTQGEW------GCSTWLVSSERLWRPDVVLLN 368
+WV +W G ++ +LW+PD+++ N
Sbjct: 110 EWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 145
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.2 bits (50), Expect = 1.5
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +2
Query: 122 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLG 286
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 287 WNAGXMG 307
WN G
Sbjct: 118 WNESEYG 124
Score = 23.4 bits (48), Expect = 2.6
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Frame = +3
Query: 279 DWVGTQGEW------GCSTWLVSSERLWRPDVVLLN 368
+WV +W G ++ +LW+PD+++ N
Sbjct: 110 EWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 145
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.9
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 212 NIRESESTVRILADLQMNWIDKRLGWNAGXMG 307
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.4 bits (48), Expect = 2.6
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Frame = +3
Query: 279 DWVGTQGEW------GCSTWLVSSERLWRPDVVLLN 368
+WV +W G ++ +LW+PD+++ N
Sbjct: 42 EWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.9
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 212 NIRESESTVRILADLQMNWIDKRLGWNAGXMG 307
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.4 bits (48), Expect = 2.6
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Frame = +3
Query: 279 DWVGTQGEW------GCSTWLVSSERLWRPDVVLLN 368
+WV +W G ++ +LW+PD+++ N
Sbjct: 42 EWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.9
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 212 NIRESESTVRILADLQMNWIDKRLGWNAGXMG 307
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.4 bits (48), Expect = 2.6
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Frame = +3
Query: 279 DWVGTQGEW------GCSTWLVSSERLWRPDVVLLN 368
+WV +W G ++ +LW+PD+++ N
Sbjct: 42 EWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.9
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 212 NIRESESTVRILADLQMNWIDKRLGWNAGXMG 307
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.4 bits (48), Expect = 2.6
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Frame = +3
Query: 279 DWVGTQGEW------GCSTWLVSSERLWRPDVVLLN 368
+WV +W G ++ +LW+PD+++ N
Sbjct: 42 EWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.9
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 212 NIRESESTVRILADLQMNWIDKRLGWNAGXMG 307
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.4 bits (48), Expect = 2.6
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Frame = +3
Query: 279 DWVGTQGEW------GCSTWLVSSERLWRPDVVLLN 368
+WV +W G ++ +LW+PD+++ N
Sbjct: 42 EWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.9
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 212 NIRESESTVRILADLQMNWIDKRLGWNAGXMG 307
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.4 bits (48), Expect = 2.6
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Frame = +3
Query: 279 DWVGTQGEW------GCSTWLVSSERLWRPDVVLLN 368
+WV +W G ++ +LW+PD+++ N
Sbjct: 42 EWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 23.8 bits (49), Expect = 1.9
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Frame = +3
Query: 282 WVGTQGEW------GCSTWLVSSERLWRPDVVLLN 368
W Q +W G + +++W+PD+VL N
Sbjct: 83 WTDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFN 117
Score = 21.8 bits (44), Expect = 7.8
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 173 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLGWNAGXMG 307
K+ VN L ++ N+ E ++ L+ W D +L W+ G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 324 VSSERLWRPDVVLLN 368
V R+WRPD +L N
Sbjct: 82 VPYNRVWRPDTILYN 96
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.4 bits (48), Expect = 2.6
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +3
Query: 324 VSSERLWRPDVVLLN 368
+ RLW+PDV++ N
Sbjct: 100 IPPHRLWKPDVLMYN 114
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.0 bits (47), Expect = 3.4
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +2
Query: 101 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 268
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 269 IDKRLGW 289
D RL +
Sbjct: 68 TDPRLAF 74
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 22.2 bits (45), Expect = 5.9
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3
Query: 333 ERLWRPDVVLLN 368
ER+WRPD N
Sbjct: 115 ERIWRPDTYFYN 126
>AB072429-1|BAB83990.1| 388|Apis mellifera IP3phosphatase protein.
Length = 388
Score = 22.2 bits (45), Expect = 5.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 451 DISTPILYAVXHLGPTTC 504
DIS+P +GPTTC
Sbjct: 356 DISSPDAVEYGIIGPTTC 373
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.8 bits (44), Expect = 7.8
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +2
Query: 101 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 268
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 269 IDKRLGW 289
D RL +
Sbjct: 68 TDPRLAF 74
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 21.8 bits (44), Expect = 7.8
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -2
Query: 118 GQ*CCVFAFCRTSYSTSEEKXVTR 47
G+ CC F T Y + K VT+
Sbjct: 602 GEQCCWHCFNCTQYQIRDHKDVTQ 625
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,560
Number of Sequences: 438
Number of extensions: 3600
Number of successful extensions: 35
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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