Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_J09
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    29   0.79 
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    28   1.4  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    28   1.8  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    28   1.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.2  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    27   3.2  
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    27   4.2  

>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
 Frame = +2

Query: 203 NDVFHSSASASSGIVALCYFLYSSLGPLSSI---LSVRWSYRTVTLIG--GSFAAFGMIL 367
           N  F  S      IV LC+FLYS L P   I     +   + ++  +G   S   FG +L
Sbjct: 275 NASFDGSYKFPIPIVLLCFFLYSLLTPFFDIHLQFQLIVMHMSIVQVGFINSVKTFGSLL 334

Query: 368 S-SAAFSITYLYFSFGAMVGTGAGLAFPATVYIV 466
           + S    +TY+      M+ T   +   AT  I+
Sbjct: 335 TCSVCLFLTYVGGFSVHMMKTTMLIGLTATTLII 368


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +2

Query: 437 LAFPATVYIVTSYFVRFRGLANGICMSGSAFGSIILPPVLRYLLETYGYKGAVLILGGIM 616
           L +P  + I+ +  + F  +   +CM    +GS +  P +  L E +G    +++LG  +
Sbjct: 31  LTWPIRIRIINTIIISFMTM---LCM----YGSSVFMPSIPELCEKFGEPETLVVLGATL 83

Query: 617 --LNVWAAALLFXPV 655
             + V    L+F P+
Sbjct: 84  YVIGVMLGPLIFSPL 98


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
 Frame = +2

Query: 284 LSSILSVRWSYRTVTLIGGSFAAFGMILSSAAF-SITYLYFSFGAMVGTGAGLAF--PA- 451
           L SIL   W +    + G SF  FG+++++    SI  +YF   +        +F  P  
Sbjct: 505 LFSILDSLWFHPLYFMFGFSFFCFGILVTTCIMVSIITVYFQLCSENYNWWWRSFITPGF 564

Query: 452 ---TVYIVTSYFVRFRGLANGICMSGSAFG-SIILPPVLRYLLETYGYKGAVLILGGIML 619
               V+I + ++  F+  ++ +  +   FG S+++  ++ +L  + G+ GA L +  I  
Sbjct: 565 CGIYVFIFSVFYWFFKISSSSLATAVLYFGYSLLISVLVFFLCGSVGFFGAFLFVNKIYA 624

Query: 620 NV 625
           ++
Sbjct: 625 SI 626


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 24/90 (26%), Positives = 37/90 (41%)
 Frame = +2

Query: 206 DVFHSSASASSGIVALCYFLYSSLGPLSSILSVRWSYRTVTLIGGSFAAFGMILSSAAFS 385
           D +H +   +S + AL      + GP+   L  RW+   +   G      G+        
Sbjct: 56  DAYHMADVTNSLLYALFTVCGWAGGPILKYLGPRWAL-ALGATGYPIYIGGLWYFDNTGK 114

Query: 386 ITYLYFSFGAMVGTGAGLAFPATVYIVTSY 475
             +  F+ GA  G  AGL + +T YI  SY
Sbjct: 115 QGFTIFT-GAYEGIAAGLLWASTAYISLSY 143


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 462  MYTVAGKARPAPVPTIAPKLKYK*VIENAALLSIIPNAAKLPPISV 325
            M T A     AP P  AP  +    + N  + S+IP+ A+ PP SV
Sbjct: 1465 MVTNAPAPSSAPAPP-APVSQLPPAVPNVPVPSMIPSVAQQPPSSV 1509


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -1

Query: 249 ATIPDEAEALEWKTSLNSTISTPKDFIVPGISILT-RVAPXKDEPAP 112
           AT   EAE L W           +  I+P + +LT ++ P K+E  P
Sbjct: 236 ATCTSEAERLAWNVYYALRAGCERLIILPNLLVLTLQIMPDKEECFP 282


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 237 DEAEALEWKTSLNSTISTPKDFIVPGISILTRVAPXKDEP 118
           +EAE L+W   +N  I TP++ + P + +     P +++P
Sbjct: 92  EEAEMLKWMCFINFDIVTPQN-VRPWVGMFRGNIPYEEKP 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,158,063
Number of Sequences: 5004
Number of extensions: 67366
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)