Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_J09
(816 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0770 + 5912412-5912476,5913759-5913779,5914015-5914638,591... 34 0.12
04_01_0025 - 348326-348566,349750-350912 33 0.36
02_05_0156 + 26341904-26342801,26343469-26344148 33 0.36
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 30 1.9
09_06_0267 + 21938300-21938371,21938963-21939235,21940665-219412... 29 3.3
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873... 29 3.3
05_05_0081 + 22248963-22249016,22249120-22249165,22249259-222493... 29 4.4
03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917 29 4.4
01_07_0276 - 42435975-42436301 29 4.4
12_01_0599 - 4892146-4893552 29 5.8
02_05_1347 + 35837967-35838060,35838524-35838783 29 5.8
03_05_0409 + 23957965-23958374,23960112-23960433 28 7.7
>07_01_0770 +
5912412-5912476,5913759-5913779,5914015-5914638,
5915264-5915439,5915526-5916124
Length = 494
Score = 34.3 bits (75), Expect = 0.12
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 1/115 (0%)
Frame = +2
Query: 197 EFNDVFHSSASASSGIVALCYFLYSSLGPLSSILSVRWSYRTVTLIGGSFAAFGMILSSA 376
E + F++ + + L FL S PL+ ILS+ + TV IG F A
Sbjct: 63 EVSAAFNAGPADLGYLTFLMNFLKSIASPLAGILSLHYDRPTVLAIGTVFWALSTGAVGV 122
Query: 377 AFSITYLYFSFGAMVGTGAGLAFPA-TVYIVTSYFVRFRGLANGICMSGSAFGSI 538
+ + F + A+ G G + PA +I SY RG G+ A G I
Sbjct: 123 SQHFRQVAF-WRAVNGLGLAIVIPALQSFIADSYKDGTRGAGFGLLSLIGAVGGI 176
>04_01_0025 - 348326-348566,349750-350912
Length = 467
Score = 32.7 bits (71), Expect = 0.36
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Frame = +2
Query: 215 HSSASASSGIVALCYFLYSSLGPLS-SILSVRWSYR----TVTLIGGSFAAFGMILSSAA 379
HS+A ++ + C+ ++ LG + ++L R + T L SF + S A
Sbjct: 54 HSTADNANTALYSCFAVFGVLGGAAHNLLGPRVTLLAGALTYPLYAASFLYYNHHPSRQA 113
Query: 380 FSITYLYFSFGAMVGTGAGLAFPATVYIVTSY 475
F +T GA++G GAGL + A I+TSY
Sbjct: 114 FPVTA-----GALLGVGAGLLWAAQGAIMTSY 140
>02_05_0156 + 26341904-26342801,26343469-26344148
Length = 525
Score = 32.7 bits (71), Expect = 0.36
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 11/147 (7%)
Frame = +2
Query: 212 FHSSASASSGIVALCYFLYSSL---GPLSSILSVRWSYRTVTLIGG--SFAAFGMILSSA 376
FH A VA F + G L L +R + V +IG + A FG+ +
Sbjct: 65 FHDPALLGETDVAFLAFYSLGMFVAGHLGDRLDLRL-FLAVGMIGSGTAVALFGVGYFLS 123
Query: 377 AFSITYLYFSFGAMVGTGAGLAFPATVYIVTSYFV-RFRGLANGICMS----GSAFGSII 541
S+ + Y + + G +P+ V IV ++F R RGL GI + G+ GS+I
Sbjct: 124 LHSLAF-YLAAQVIAGLLQSTGWPSVVAIVGNWFRGRRRGLIMGIWNAHTSIGNISGSLI 182
Query: 542 LPPVLRYLLE-TYGYKGAVLILGGIML 619
VLRY ++ G ++ GG+++
Sbjct: 183 AAAVLRYGWGWSFIVPGLLIAFGGVLV 209
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 118 SPTFHRAGPSPSRVPAPDRS*IDPLRPPACRHPAS 14
+PT + PSP +P P + DP P RHP+S
Sbjct: 139 TPTHTQPRPSPPLLPTPATA-ADPANPNKARHPSS 172
>09_06_0267 +
21938300-21938371,21938963-21939235,21940665-21941202,
21941288-21941490,21941603-21941827
Length = 436
Score = 29.5 bits (63), Expect = 3.3
Identities = 25/86 (29%), Positives = 35/86 (40%)
Frame = +2
Query: 401 FSFGAMVGTGAGLAFPATVYIVTSYFVRFRGLANGICMSGSAFGSIILPPVLRYLLETYG 580
F FGA + A +Y Y R G S + FG I+ P V L+
Sbjct: 341 FLFGARICISASFIV-LHIYAPEIYPTAVRATGVGFASSIARFGGILCPLVAVGLVHACH 399
Query: 581 YKGAVLILGGIMLNVWAAALLFXPVE 658
A+LI +ML V A+ + P+E
Sbjct: 400 QTAAILIFITVML-VSGVAVSYFPLE 424
>03_05_0001 -
19386264-19386284,19386446-19386517,19386614-19387357,
19387454-19388884,19388953-19389118,19392035-19392114,
19392393-19392462,19392550-19392761,19392837-19392890,
19393471-19393623,19393715-19393930,19394029-19394248,
19394332-19394399,19394510-19394643,19394755-19394854,
19394943-19395421,19395506-19395699,19396270-19396355,
19396364-19396444,19396842-19397023,19397305-19397346,
19398247-19398558,19399374-19399434,19399435-19399617,
19399744-19399863,19400380-19401051,19402597-19402668,
19402742-19402865,19403563-19403651,19405023-19405097
Length = 2170
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = +2
Query: 176 SFGVLMVEFNDVFHSSASASSGIVALCYFLYSSLGPLSSILSVRWSYRTVTLI 334
S VL VEFN + SS + + ++ Y ++ +++ L +R +YR++TL+
Sbjct: 89 SSNVLEVEFNGPYSSSEATAIAAFSMFVLFYQAI--VTNHLVLRGTYRSLTLV 139
>05_05_0081 +
22248963-22249016,22249120-22249165,22249259-22249357,
22250178-22250337,22250858-22251128,22251295-22251486
Length = 273
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = +2
Query: 398 YFSFGAMVGTGAGLAFPATVYIVTSYFVRFRGLANGICMSGSAFGSIILPPVLRYLLETY 577
YF++ A V G A PA + + YF L CM G + I +P + L+
Sbjct: 160 YFNWAASVMYGYAAAVPAIFFFLFQYFGSRPSLVRFWCMWGYSL-FIFIPASVLLLIPVE 218
Query: 578 GYKGAVLILGG 610
+ ++IL G
Sbjct: 219 FLRWVIIILVG 229
>03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917
Length = 447
Score = 29.1 bits (62), Expect = 4.4
Identities = 22/87 (25%), Positives = 32/87 (36%)
Frame = -3
Query: 559 PKHRGQDDAAERGARHADPVRQTTEPHEV*SDYVHCGWEGEASARTYHSTEAKIQIGYRK 380
P + +++ AR RQ S+ WE +ASAR S EA+
Sbjct: 324 PNYMANTESSRAKARSQSAPRQRASVSSSASEASSVRWERQASARRRASLEAQAASAPPN 383
Query: 379 CCATQYHSKRCETTPDQCDSPV*PPHG 299
C + R + P Q +P P G
Sbjct: 384 KCGAAMMA-RVQRCPSQASAPASCPWG 409
>01_07_0276 - 42435975-42436301
Length = 108
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 119 GSSLXGATLVNILIPGTIKSFGVLMVEFNDVFHSSASASSGIVALCYFLYSSL 277
G S GA + +PG + + GVLMV + H + + ++ L F++ S+
Sbjct: 22 GESGYGAAVFFACLPGALIAIGVLMVLYYRSHHGHGALAVFLLVLSVFVFLSV 74
>12_01_0599 - 4892146-4893552
Length = 468
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 407 FGAMVGTGAGLAF-PATVYIVTSYFVRFRGLANG 505
FG +VG ++F P TVY+ T ++ RG+ G
Sbjct: 394 FGVIVGLLGAISFWPLTVYLPTEMYIAQRGVRRG 427
>02_05_1347 + 35837967-35838060,35838524-35838783
Length = 117
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -3
Query: 511 ADPVRQTTEPHEV*SDYVHCGWEGEASARTYHSTEAKIQIGYR 383
A P R + H+ + +HC G A Y TE + YR
Sbjct: 3 ASPTRLLSSSHQPCKESLHCTATGRTWAGEYELTEENVHTAYR 45
>03_05_0409 + 23957965-23958374,23960112-23960433
Length = 243
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 101 GGTISQSRSGAGPIVNRPAPTAGVSSSGKL 12
GG + +S SG+GP++ A T G+L
Sbjct: 8 GGKLGRSGSGSGPVMTTSATTTAAGGCGEL 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,366,545
Number of Sequences: 37544
Number of extensions: 569024
Number of successful extensions: 1775
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1775
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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