Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_J09
         (816 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    25   0.84 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   3.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   3.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.9  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 25.0 bits (52), Expect = 0.84
 Identities = 19/73 (26%), Positives = 31/73 (42%)
 Frame = +2

Query: 395 LYFSFGAMVGTGAGLAFPATVYIVTSYFVRFRGLANGICMSGSAFGSIILPPVLRYLLET 574
           +Y  F  ++G  + + F A +           G+A    M        I+P V+  ++  
Sbjct: 8   IYAPFFGVMGAASAIIFSA-LGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 66

Query: 575 YGYKGAVLILGGI 613
           YG   AVLI GG+
Sbjct: 67  YGLVVAVLIAGGL 79


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 19  PDDDTPAVGAGRFTIGPAPERDW 87
           P   T  +G+G + IG + E DW
Sbjct: 376 PGXYTMVIGSGVYRIGSSVEFDW 398


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +2

Query: 266 YSSLGPLSSILSVRWSYRTVTLIGGSFAAFGM 361
           + S+  +  + S  WSY +     GS+  +G+
Sbjct: 124 FQSIALVDVVKSANWSYVSTVYSEGSYGEYGI 155


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 493 SGERDLHVGLRVRQHHPAPG 552
           +G+   H GL    HHP PG
Sbjct: 269 NGDMFCHTGLGHYGHHPDPG 288


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
 Frame = +1

Query: 85  WEMVPPDGKWGWFI----LXRCDPGQYTDTGNDKV 177
           W ++P  G WG F+    L  C     TDT   ++
Sbjct: 176 WALMPVMGVWGRFVPEGFLTSCSFDYLTDTNEIRI 210


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +2

Query: 266 YSSLGPLSSILSVRWSYRTVTLIGGSFAAFGM 361
           + S+  +  + S  WSY +     GS+  +G+
Sbjct: 214 FQSIALVDVVKSANWSYVSTVYSEGSYGEYGI 245


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 533 SIILPPVLRYLLETYGYKGAVLILGGIMLN 622
           S++LP + +YLL T+      +++  I++N
Sbjct: 290 SLVLPLIAKYLLFTFIMNTVSILVTVIIIN 319


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 116 PHFPSGGTISQSRSGAGPIVNRPAPTA 36
           P +P GG+ S S S      +  +PT+
Sbjct: 81  PSYPGGGSSSPSPSSPSSFFSSVSPTS 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,212
Number of Sequences: 438
Number of extensions: 5181
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)