Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_J06
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +2

Query: 413 PXXXXNPPPPPPXXXXXXPPPPXXGGPGXXPXPPXXP 523
           P     P PP P        PP    PG  P  P  P
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMP 446


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 427  EPPPPPP 447
            EPPPPPP
Sbjct: 1858 EPPPPPP 1864



 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 412  PXXGXEPPPPPP 447
            P  G   PPPPP
Sbjct: 1852 PVSGSPEPPPPP 1863


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 465 PPPPPXRG 488
           PPPPP RG
Sbjct: 376 PPPPPIRG 383


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 435 PPPPPXXXXGP 467
           PPPPP    GP
Sbjct: 343 PPPPPPSSSGP 353


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +1

Query: 427  EPPPPPP 447
            +PPPPPP
Sbjct: 1354 QPPPPPP 1360



 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 432  PPPPPPXXXXG 464
            PPPPPP    G
Sbjct: 1355 PPPPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.155    0.578 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,864
Number of Sequences: 438
Number of extensions: 7629
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)