Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_J02
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1079 + 30222017-30222903,30222992-30223117,30223752-302238...    29   4.2  
03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559     29   4.2  
09_04_0010 - 13686424-13686822                                         28   9.7  
01_06_1212 + 35459675-35460073                                         28   9.7  

>03_05_1079 +
           30222017-30222903,30222992-30223117,30223752-30223808,
           30224883-30224913,30225159-30225236,30225297-30225383
          Length = 421

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
 Frame = +1

Query: 442 PRDHITSTGFRSCVPXXXXXXXXLEGTCGIRLHRSSSGQRYA---LGPEIVSCRLEAACR 612
           PR +   +  R C          L+G CG    + S  Q +    L P+   C+ E AC 
Sbjct: 337 PRGYYKCSSVRGCPARKHVERSGLQGECGKATDKRSDRQPFVSVLLCPKSKPCKSEMACF 396

Query: 613 VGQGSPGG 636
           +   SP G
Sbjct: 397 LVATSPLG 404


>03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559
          Length = 789

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 293 PARALSALNALRKSRQHYDAVLVA 364
           P RA  ++N L K R+H DAV VA
Sbjct: 628 PDRATESINRLMKRREHIDAVKVA 651


>09_04_0010 - 13686424-13686822
          Length = 132

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 565 RIFDPNSTGVSVFHKFPQGVR-VHVFHP 485
           RI+ P S+G  + H  PQG R  H+ HP
Sbjct: 56  RIYKPRSSGRCLLHPPPQGRRSPHLHHP 83


>01_06_1212 + 35459675-35460073
          Length = 132

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 565 RIFDPNSTGVSVFHKFPQGVR-VHVFHP 485
           RI+ P S+G  + H  PQG R  H+ HP
Sbjct: 56  RIYKPRSSGRCLLHPPPQGRRSPHLHHP 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,841,137
Number of Sequences: 37544
Number of extensions: 421457
Number of successful extensions: 1038
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)