Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_I24
(809 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0373 + 2783596-2784933 33 0.27
11_06_0610 - 25449085-25453284 32 0.47
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 32 0.62
11_01_0066 - 536281-537196,537397-537452 31 0.82
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 31 0.82
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 0.82
02_05_0948 - 33003921-33006269 29 3.3
02_04_0452 + 23044190-23045227 29 3.3
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 3.3
04_01_0041 - 464695-464850,467485-469029 29 5.8
01_05_0227 - 19512866-19514983 29 5.8
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 29 5.8
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 7.6
>07_01_0373 + 2783596-2784933
Length = 445
Score = 33.1 bits (72), Expect = 0.27
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = -2
Query: 91 EEEKALTKEGMAEAAETXKGTISSMNRSSS 2
E+++ LTK G + +ET KG++ S++RS S
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRSES 180
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 32.3 bits (70), Expect = 0.47
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +2
Query: 533 PPSPAISATSTRSSNPRFHTPTTPDLTSIS-INPLTPY*XESAPGLKPPXVIKXSISVSX 709
PP+P A+S P HTP+ P+ T S +P TP S+P P S S
Sbjct: 618 PPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSPPPPTPEGHTPSPPKST 677
Query: 710 PP 715
PP
Sbjct: 678 PP 679
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +2
Query: 533 PPSPAISATSTRSSNPRFHTPTTPDLT-SISINPLTPY*XESAPGLKPPXVIKXSISVSX 709
PP+P ++S P H P+ P T + +P TP S+P P S S
Sbjct: 684 PPTPESESSSPPPPAPEGHMPSPPKSTPPVEKSPPTPESEASSPPPPAPEGHTPSPPKSS 743
Query: 710 PP 715
PP
Sbjct: 744 PP 745
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 31.9 bits (69), Expect = 0.62
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +2
Query: 527 IKPPSPAISATSTR-SSNPR--FHTPTTPDLTSISINPLTP 640
I PPSPA + S+R S +PR F TP T T+ S +P +P
Sbjct: 25 ITPPSPASTPRSSRPSESPRSGFSTPATAPRTAASPSPPSP 65
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 31.5 bits (68), Expect = 0.82
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +2
Query: 533 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*XESAPGLKPPXVIKXSISVSXP 712
PP P+ + T+TR+S PT P + + ++ P P + P S + + P
Sbjct: 238 PPPPSPTPTTTRAS------PTPPPIPTATVRPPPPL---PRATVTPTPTTPPSTATTTP 288
Query: 713 PRXWAWLXGV 742
W W+ GV
Sbjct: 289 IPTWVWVGGV 298
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 31.5 bits (68), Expect = 0.82
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 533 PPSPAISATSTR-SSNPRFHTPTTPDLTSISINPLTPY*XESAPGLKPPXVIKXSISVSX 709
P +PA +A+S+ ++ P TPT+P S + TP S P PP + S S
Sbjct: 35 PLAPAAAASSSNPNATPADTTPTSPPPASPPLPSATPPLAASPPPPPPPPPPRNSPSPPK 94
Query: 710 PP 715
PP
Sbjct: 95 PP 96
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 31.5 bits (68), Expect = 0.82
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 545 AISATSTRSSNPRFHTPTTP 604
A S+T+TR S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>02_05_0948 - 33003921-33006269
Length = 782
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 533 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*XESAP 661
P +P ++A S+R N R PD+ + +N L + ESAP
Sbjct: 493 PSAPRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGESAP 535
>02_04_0452 + 23044190-23045227
Length = 345
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 480 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPP 602
H +L H+ +A SH SR H P + P S PP
Sbjct: 166 HGCLLLHHAGHGHGHAHSHSHSHSRAHNPSTRPPTSAPPPP 206
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.5 bits (63), Expect = 3.3
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +1
Query: 283 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 456
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 457 VEGVNVLATPSSSRITIGGLALMHQ 531
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 244 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 420
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 421 TVD 429
+D
Sbjct: 100 PLD 102
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 461 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 369
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +2
Query: 530 KPPS--PAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*XESAPGLKPPXVIKXSISV 703
KPP+ PA T+ R + P P P S+ P+ P AP KPP ++
Sbjct: 217 KPPAYAPAKPPTALRPAIPPAAMPKPP-----SVAPVQPPQRPPAPATKPPPSFPPQLAP 271
Query: 704 SXPP 715
+ PP
Sbjct: 272 TMPP 275
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 28.3 bits (60), Expect = 7.6
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +1
Query: 235 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 415 PVTVDLCWTTADVTVEGVNVLATPSS 492
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,931,520
Number of Sequences: 37544
Number of extensions: 433224
Number of successful extensions: 1337
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -