Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_I22
(829 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.35
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.9
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 27 2.5
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 27 2.5
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 27 4.3
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 26 5.7
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 26 7.5
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 26 7.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.9
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 25 9.9
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.35
Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Frame = +1
Query: 418 RKSPDPNPHGRWGMWESNLTKNSCRSQ-PAPYPGPGGNPVGAIETAGQGLRRAHYIHPAV 594
++ P P P R + + S S P P P P N G+I QG A
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQG-------RSAP 361
Query: 595 PQTPDRRXPAT*PXVPSVDGPRA 663
P P R P+T P + RA
Sbjct: 362 PPPPPRSAPSTGRQPPPLSSSRA 384
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 121 MEVSAMPPMPLDFSMVRSGSDSPGVAVREESP 216
++V+ +PP P S +R+G S G R SP
Sbjct: 54 VDVTKLPPPPKHASQLRAGGSSTGSTPRTASP 85
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/60 (21%), Positives = 29/60 (48%)
Frame = +2
Query: 431 IQTRTAGGVCGSRTSLKTPAAHSRRPTPDQAETQSELLRRRDRVYAEHITSIPPSPRRRT 610
+ T + + S+ +PA+ S P P+Q Q L+ + D + + S+ +P +++
Sbjct: 171 VSTSASSSNASNTVSVTSPASSSATPLPNQPSQQQFLVSKND-AFTTFVHSVHNTPMQQS 229
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 27.5 bits (58), Expect = 2.5
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Frame = -3
Query: 368 LRSDGRFSEALLFLELVSANVLGLESHELIYWLAQAPLG--VTTLKALFV-DDLGDSSRT 198
L S+G + L + L + + ++ E ++Q P+ + L L V DD +S
Sbjct: 993 LNSEGAINSYSLDIHLNQSTINSIDFFESNQ-ISQIPINDSIIVLSGLIVLDDSSKASAV 1051
Query: 197 ATPGES-LPLLTIEKSNGIGGI 135
+S LPLLT K NG GI
Sbjct: 1052 YCVNKSCLPLLTAFKDNGEAGI 1073
>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 26.6 bits (56), Expect = 4.3
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -2
Query: 426 RFSQTQPTGFLAGSSQ*VASPIRW*IQRSTALPRA-SVSKRPRVRVP*AHLLAGTSPFRG 250
+F T P F SS+ V + T +P+ S +PR +VP +H L T P R
Sbjct: 124 KFIPTDPLYFDRASSKPVLQFPYSSVAALTPVPKKPSKPSKPRKKVPVSHPLPPTPPSRE 183
Query: 249 NH 244
H
Sbjct: 184 EH 185
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 272 LAQAPLGVTTLKALFVDDLGDSSRTATPGESLPLLTIEKSNG 147
+ ++ LG L + VDD+GD + T L LL +E G
Sbjct: 36 VVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEHPAG 77
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 463 ESNLTKNSCRSQPAPYPGPGGNPVGAIETAGQ 558
+S+L+ SC S P P P N V +I+ Q
Sbjct: 188 DSSLSPVSCSSFPKPIPNHFENDVSSIQNTNQ 219
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.8 bits (54), Expect = 7.5
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 157 FSMVR-SGSDSPGVAVREESPRSSTNSAFRVVTPKGACASQ*MSSWDSNPRTFADTSSRK 333
F++V + S S + S SST S+ TP +S SS S+ + + +SS K
Sbjct: 108 FNIVEGAASSSSSSSSSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSK 167
Query: 334 SSA 342
SS+
Sbjct: 168 SSS 170
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 9.9
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = +1
Query: 118 TMEVSAMPPMPLDFSMVRSGSDSPGVAVREESPRSSTNSAFRVVTPKGACASQ*MSSWDS 297
T+ S+ P FS S S S S SST+S+ + + SS S
Sbjct: 342 TISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSS 401
Query: 298 NPRTFADTSSRKSSA 342
+ + +SS KSS+
Sbjct: 402 SLSSHKSSSSSKSSS 416
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +2
Query: 98 FVPFIN*LWKSVLCRRCRWTFRW 166
F+PF WK V RCR W
Sbjct: 237 FLPFKTRPWKEVYAERCRVECNW 259
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,238,627
Number of Sequences: 5004
Number of extensions: 65097
Number of successful extensions: 153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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