Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_I22
(829 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0023 + 16537257-16537272,16537515-16537929,16538404-165384... 31 1.5
01_01_0269 + 2223683-2224060 31 1.5
02_05_0551 + 29907768-29907909,29907995-29909280 30 2.0
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 30 2.6
10_08_0824 + 20821724-20822137,20822457-20822543,20822729-208228... 29 3.4
03_06_0178 - 32168000-32168128,32168211-32168308,32168412-321684... 29 4.5
02_05_0902 + 32620668-32621209,32621847-32622258,32622471-326226... 29 4.5
01_06_1805 - 39999987-40000169,40000648-40000974,40001724-400020... 29 4.5
03_05_0266 + 22537578-22538081 29 6.0
01_05_0809 - 25422832-25422919,25423887-25424443 29 6.0
02_05_1274 + 35389179-35389597,35389690-35389919,35391350-353914... 28 7.9
01_07_0115 - 41164227-41164452,41164515-41164601,41164757-41165313 28 7.9
>03_04_0023 +
16537257-16537272,16537515-16537929,16538404-16538466,
16538604-16538607
Length = 165
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 449 GGVCGSRTSLKTPAAHSRRPTPDQAETQSELLRRRDR 559
GG + + AH+R PTP Q + + + LRRR R
Sbjct: 54 GGAQHAHGGEQLQLAHARTPTPPQQQRRQQQLRRRQR 90
>01_01_0269 + 2223683-2224060
Length = 125
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 614 GRQQHDRRFPRSTGQEPIDSAXLHLPRNXL 703
G+++HD P ST P++ A LH PR L
Sbjct: 31 GQRRHDAGQPTSTQPTPVEGARLHQPRPAL 60
>02_05_0551 + 29907768-29907909,29907995-29909280
Length = 475
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 175 GSDSPGVAVREESPRSSTNSAFRVVTPKGACASQ*MSSWDSNPRTFADT 321
G D + V SPR+ T++ R+ G CA +S +P +F DT
Sbjct: 46 GRDWDSLRVSAASPRNGTSAVLRLTHRHGPCAPAGKASALGSPPSFLDT 94
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = +2
Query: 512 PDQAETQSELLRRRDRVYAEHITSIPPSPRRRTGGRQQHD 631
P ET ELLR+ VY E +PPSP + G QHD
Sbjct: 137 PTLPETSFELLRK---VYPEITPVVPPSPVEQ-NGNDQHD 172
>10_08_0824 +
20821724-20822137,20822457-20822543,20822729-20822829,
20822917-20822967,20823616-20823790,20823878-20824192,
20824504-20824707,20824799-20825314,20825400-20825609,
20826092-20826280,20827254-20827405,20827685-20827837,
20827925-20828006,20828086-20828475
Length = 1012
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 82 IFHVMFRTVY*LTMEVSAMPPMPLD 156
+F FRT+Y L+ ++A+PPMP D
Sbjct: 807 LFEDAFRTMYGLSDGITALPPMPND 831
>03_06_0178 -
32168000-32168128,32168211-32168308,32168412-32168466,
32169020-32169121,32169221-32169340,32169641-32169699,
32169821-32169959,32170080-32170301
Length = 307
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 493 SQPAPYPGPGGNPVGAIETAGQGLRRAHYIHPAV 594
++PAP P G N V E AG G +R + A+
Sbjct: 37 AEPAPAPAAGSNGVAGEEEAGGGGKREEWYSKAI 70
>02_05_0902 +
32620668-32621209,32621847-32622258,32622471-32622675,
32622712-32622806,32622945-32623557,32623652-32623820,
32624392-32624749,32625226-32625336,32626207-32626561,
32627262-32627484,32627837-32628058,32628628-32628781
Length = 1152
Score = 29.1 bits (62), Expect = 4.5
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +1
Query: 136 MPPMPLDFSMVRSGSD-SPGVAVREESPRSSTNSAFRVVTPKGACASQ*MSSWDSNPRTF 312
+PP P F+ G +P A S SS F + P+ + A S W SNP
Sbjct: 7 IPPPPPAFAAGGEGDPHAPTTAAARSSSSSSLFPLFPLSAPEESSAPAAGSQWLSNPSFS 66
Query: 313 ADTSS 327
D SS
Sbjct: 67 FDASS 71
>01_06_1805 -
39999987-40000169,40000648-40000974,40001724-40002017,
40002112-40002231,40002714-40002776,40003150-40003310,
40003864-40004035
Length = 439
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +1
Query: 424 SPDPNPHGRWGMWESNLTKNSCRSQPAPYPGPGGNP 531
S DP GMW+ S QP PYP G P
Sbjct: 49 SHDPAALYGEGMWQQMTMSGSGAMQPGPYPERSGEP 84
>03_05_0266 + 22537578-22538081
Length = 167
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = +1
Query: 454 GMWESNLTKNSCRSQPAPYPGPGGNPVGAIETAGQGLRR 570
G W+ T PAP P P G + G G RR
Sbjct: 14 GSWQPAATSTPATVSPAPAVSPVAAPAGELGGGGAGARR 52
>01_05_0809 - 25422832-25422919,25423887-25424443
Length = 214
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 222 RPGRLFSHGHPWRITTTPHHRKVQRHRRH 136
+PGR S G PWR + R +RH RH
Sbjct: 64 QPGRCASRGAPWR--PSSQQRDGRRHHRH 90
>02_05_1274 +
35389179-35389597,35389690-35389919,35391350-35391414,
35391603-35391902
Length = 337
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/40 (45%), Positives = 20/40 (50%)
Frame = +2
Query: 485 PAAHSRRPTPDQAETQSELLRRRDRVYAEHITSIPPSPRR 604
PA H P P E LL R V++EH S PSPRR
Sbjct: 31 PAGH---PDPSVLERLLRLLASRG-VFSEHTGSSSPSPRR 66
>01_07_0115 - 41164227-41164452,41164515-41164601,41164757-41165313
Length = 289
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 418 RKSPDPNPHGRWGMWESNLTKNSCRSQPAPYP 513
R+ P HGRW MW + S R + P P
Sbjct: 160 RRRRAPTWHGRWKMWPPATSSGSGRGRYHPIP 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,227,539
Number of Sequences: 37544
Number of extensions: 582671
Number of successful extensions: 2160
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2157
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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