Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_I22
(829 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB075820-1|BAB85526.1| 821|Homo sapiens KIAA1940 protein protein. 35 0.41
BC087848-1|AAH87848.1| 261|Homo sapiens LGI4 protein protein. 34 0.55
AY358121-1|AAQ88488.1| 261|Homo sapiens LGI4 protein. 34 0.55
AJ487959-1|CAD32306.1| 537|Homo sapiens LGI1-like protein 3 pro... 34 0.55
AJ487519-1|CAD31787.1| 537|Homo sapiens leucine-rich glioma ina... 34 0.55
AF467954-1|AAM49552.1| 537|Homo sapiens LGI4 protein. 34 0.55
Y10936-1|CAA71862.1| 202|Homo sapiens hypothetical protein prot... 31 5.1
AJ133727-1|CAB42630.1| 889|Homo sapiens hyperpolarization-activ... 31 6.7
AJ012582-1|CAB42602.1| 889|Homo sapiens hyperpolarization-activ... 31 6.7
AF065164-1|AAC28444.2| 889|Homo sapiens hyperpolarization-activ... 31 6.7
AC005559-2|AAC33280.2| 528|Homo sapiens hyperpolarization activ... 31 6.7
>AB075820-1|BAB85526.1| 821|Homo sapiens KIAA1940 protein protein.
Length = 821
Score = 34.7 bits (76), Expect = 0.41
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 481 NSCRSQPAPYPGPGGNPVGAIETA-GQGLRRAHYIHPAVPQT 603
+SC S P+ G GG GA A G G R H++ PAVP T
Sbjct: 294 SSCGSTPSASLGRGGGGGGAGPNARGPGRMREHHVGPAVPNT 335
>BC087848-1|AAH87848.1| 261|Homo sapiens LGI4 protein protein.
Length = 261
Score = 34.3 bits (75), Expect = 0.55
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Frame = -3
Query: 407 PLGFSPDLLSESRLRSDGRFSEALLFLELVSANVLGLESHELIYWLAQAPLGVTTLKALF 228
P+ FSP LLS S +R+ +A FL + S ++L S+ A G++ L+ LF
Sbjct: 47 PVSFSPTLLSLSLVRTGVTQLKAGSFLRIPSLHLLLFTSNSFSVIEDDAFAGLSHLQYLF 106
Query: 227 VDD--LGDSSRTATPG-ESLPLLTIEKSN 150
++D +G S+ A G SL L++ ++
Sbjct: 107 IEDNEIGSISKNALRGLRSLTHLSLANNH 135
>AY358121-1|AAQ88488.1| 261|Homo sapiens LGI4 protein.
Length = 261
Score = 34.3 bits (75), Expect = 0.55
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Frame = -3
Query: 407 PLGFSPDLLSESRLRSDGRFSEALLFLELVSANVLGLESHELIYWLAQAPLGVTTLKALF 228
P+ FSP LLS S +R+ +A FL + S ++L S+ A G++ L+ LF
Sbjct: 47 PVSFSPTLLSLSLVRTGVTQLKAGSFLRIPSLHLLLFTSNSFSVIEDDAFAGLSHLQYLF 106
Query: 227 VDD--LGDSSRTATPG-ESLPLLTIEKSN 150
++D +G S+ A G SL L++ ++
Sbjct: 107 IEDNEIGSISKNALRGLRSLTHLSLANNH 135
>AJ487959-1|CAD32306.1| 537|Homo sapiens LGI1-like protein 3
protein.
Length = 537
Score = 34.3 bits (75), Expect = 0.55
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Frame = -3
Query: 407 PLGFSPDLLSESRLRSDGRFSEALLFLELVSANVLGLESHELIYWLAQAPLGVTTLKALF 228
P+ FSP LLS S +R+ +A FL + S ++L S+ A G++ L+ LF
Sbjct: 47 PVSFSPTLLSLSLVRTGVTQLKAGSFLRIPSLHLLLFTSNSFSVIEDDAFAGLSHLQYLF 106
Query: 227 VDD--LGDSSRTATPG-ESLPLLTIEKSN 150
++D +G S+ A G SL L++ ++
Sbjct: 107 IEDNEIGSISKNALRGLRSLTHLSLANNH 135
>AJ487519-1|CAD31787.1| 537|Homo sapiens leucine-rich glioma
inactivated protein 4 protein.
Length = 537
Score = 34.3 bits (75), Expect = 0.55
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Frame = -3
Query: 407 PLGFSPDLLSESRLRSDGRFSEALLFLELVSANVLGLESHELIYWLAQAPLGVTTLKALF 228
P+ FSP LLS S +R+ +A FL + S ++L S+ A G++ L+ LF
Sbjct: 47 PVSFSPTLLSLSLVRTGVTQLKAGSFLRIPSLHLLLFTSNSFSVIEDDAFAGLSHLQYLF 106
Query: 227 VDD--LGDSSRTATPG-ESLPLLTIEKSN 150
++D +G S+ A G SL L++ ++
Sbjct: 107 IEDNEIGSISKNALRGLRSLTHLSLANNH 135
>AF467954-1|AAM49552.1| 537|Homo sapiens LGI4 protein.
Length = 537
Score = 34.3 bits (75), Expect = 0.55
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Frame = -3
Query: 407 PLGFSPDLLSESRLRSDGRFSEALLFLELVSANVLGLESHELIYWLAQAPLGVTTLKALF 228
P+ FSP LLS S +R+ +A FL + S ++L S+ A G++ L+ LF
Sbjct: 47 PVSFSPTLLSLSLVRTGVTQLKAGSFLRIPSLHLLLFTSNSFSVIEDDAFAGLSHLQYLF 106
Query: 227 VDD--LGDSSRTATPG-ESLPLLTIEKSN 150
++D +G S+ A G SL L++ ++
Sbjct: 107 IEDNEIGSISKNALRGLRSLTHLSLANNH 135
>Y10936-1|CAA71862.1| 202|Homo sapiens hypothetical protein
protein.
Length = 202
Score = 31.1 bits (67), Expect = 5.1
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +1
Query: 460 WESNLTKNSCRSQPAPYPGPGGNPVGAIETAGQGLRRAHYIHPA-VPQTPDRR--XPAT* 630
W S +T C + GP G G+ AG G RAH+ HP+ +P+ P R PA
Sbjct: 25 WASTITTGCCPAMGQAGAGPAGRK-GS--EAGGGPGRAHHAHPSPLPREPRVRTGPPAHS 81
Query: 631 PXVPSVD 651
P +D
Sbjct: 82 PTPGRID 88
>AJ133727-1|CAB42630.1| 889|Homo sapiens
hyperpolarization-activated cyclic nucleotide-gated
channel hHCN2 protein.
Length = 889
Score = 30.7 bits (66), Expect = 6.7
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +1
Query: 400 PSGLCLRKSPDPNPHGRWGMWESNLTKNSCR-SQPAPYPGPGGNPVGAIETAG 555
P+G C R P +P G G SCR + P PGPG E AG
Sbjct: 98 PNGECGRGEPQCSPAGPEGPARGPKVSFSCRGAASGPAPGPGPAEEAGSEEAG 150
>AJ012582-1|CAB42602.1| 889|Homo sapiens
hyperpolarization-activated cation channel HCN2 protein.
Length = 889
Score = 30.7 bits (66), Expect = 6.7
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +1
Query: 400 PSGLCLRKSPDPNPHGRWGMWESNLTKNSCR-SQPAPYPGPGGNPVGAIETAG 555
P+G C R P +P G G SCR + P PGPG E AG
Sbjct: 98 PNGECGRGEPQCSPAGPEGPARGPKVSFSCRGAASGPAPGPGPAEEAGSEEAG 150
>AF065164-1|AAC28444.2| 889|Homo sapiens
hyperpolarization-activated, cyclic nucleotide-gated
channel 2 protein.
Length = 889
Score = 30.7 bits (66), Expect = 6.7
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +1
Query: 400 PSGLCLRKSPDPNPHGRWGMWESNLTKNSCR-SQPAPYPGPGGNPVGAIETAG 555
P+G C R P +P G G SCR + P PGPG E AG
Sbjct: 98 PNGECGRGEPQCSPAGPEGPARGPKVSFSCRGAASGPAPGPGPAEEAGSEEAG 150
>AC005559-2|AAC33280.2| 528|Homo sapiens hyperpolarization
activated cyclic nucleotide-gated potassium channel 2
protein.
Length = 528
Score = 30.7 bits (66), Expect = 6.7
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +1
Query: 400 PSGLCLRKSPDPNPHGRWGMWESNLTKNSCR-SQPAPYPGPGGNPVGAIETAG 555
P+G C R P +P G G SCR + P PGPG E AG
Sbjct: 98 PNGECGRGEPQCSPAGPEGPARGPKVSFSCRGAASGPAPGPGPAEEAGSEEAG 150
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,970,419
Number of Sequences: 237096
Number of extensions: 2953087
Number of successful extensions: 8992
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8964
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10370898348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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