Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_I11
(780 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 28 1.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 1.7
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S... 27 3.0
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.0
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 27 4.0
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 27 4.0
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 26 5.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 7.0
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 25 9.2
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 9.2
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 127 SLPTRTSPRCDAGSARSQSELFNDTSQS 210
S+PT TSP + + RS + + N+T QS
Sbjct: 231 SVPTTTSPNNENNALRSTANVINNTRQS 258
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/51 (25%), Positives = 20/51 (39%)
Frame = +2
Query: 458 PATTQTTILRVPPLLHDVTLTLRKPTANTCQARTSTHFTGKTCIRXRXPKT 610
P T+ T + PP+ + P ++ TST T T + P T
Sbjct: 1643 PITSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPIT 1693
>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 413 KTFYHHANFLPQQILPATTQTTILRVPPLLHDVTLTLRKPTANTCQART 559
+TF HHAN P++IL + R L + ++K N +T
Sbjct: 13 RTFAHHANLTPRKILHDLPEAAHARKQIPLRPGVILVKKGMTNAWDEKT 61
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 3.0
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 426 TMQTSYRNKSYQPPRKLQFYGFHLSYTMLLSH*GSQPRTLVKHAQART 569
TM + ++K RKL+ HL + L++H QP +HAQ RT
Sbjct: 1356 TMLKTSQSKDSSSLRKLRATCLHLLFASLVAHKFDQP----QHAQTRT 1399
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 31 QTEIHHCFTAEIGRXDGTRAVDGTTEHPSGATSLPTRTSPRCDAGSARSQSELFN 195
+TE+ A + R + + H SG+TS TRT S + SEL +
Sbjct: 1089 ETEVPDVINARVRRKNVNIGSSNSIRHVSGSTSRSTRTRSLSKPLSPEAVSELMS 1143
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 26.6 bits (56), Expect = 4.0
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +1
Query: 58 AEIGRXDGTRAVDGTTEHPSGATSLPTRTSPRCDAGSARSQSELFNDT 201
A G T A + TT P+ T+ TRT+PR A + S N T
Sbjct: 136 APAGNHSSTTA-NRTTSTPTTTTARTTRTTPRPTATTNTSNQSTSNST 182
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +1
Query: 556 HKHALHRKNLHPXXEXENRRXAKXXPXGRXXLKVPKNS 669
H A +KN + NR +K P ++ PKN+
Sbjct: 13 HNRASEKKNSRTHNKKTNRNQSKEKPVSSRSVETPKNA 50
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 7.0
Identities = 23/100 (23%), Positives = 37/100 (37%)
Frame = +1
Query: 379 EVSPPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTH 558
++S P+ +D L +L+T + S T S +SH++ +RE
Sbjct: 683 KISVPSAKMSYKD-LDYVELMTGKKVYSRTERKKDTQKQSHDHGHSHSKSHDREKEKEKK 741
Query: 559 KHALHRKNLHPXXEXENRRXAKXXPXGRXXLKVPKNSNVS 678
K HRK+ E E P P +S+ S
Sbjct: 742 KDREHRKHRETEEEDEGPPPQPARPESTRPALAPPSSSHS 781
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 9.2
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 139 RTSPRCDAGSARSQSELFNDTSQSPTRRRALAQVQPERGGSN 264
RT P S S+SEL N+T+ +RR L ++ +R G N
Sbjct: 16 RTLPALHGSSFSSRSELDNNTNSKISRR--LRELVCQRMGEN 55
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 9.2
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +2
Query: 428 HANFLPQQILPATTQTTILRVPPLLHDVTLTLRKPT--ANT 544
H N + P T T VPP H T T+ PT ANT
Sbjct: 114 HVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTVVPPTTHANT 154
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.130 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,718,056
Number of Sequences: 5004
Number of extensions: 47653
Number of successful extensions: 165
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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