Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_I04
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   124   1e-30
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   124   1e-30

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  124 bits (298), Expect = 1e-30
 Identities = 57/74 (77%), Positives = 58/74 (78%)
 Frame = +2

Query: 425 GLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXX 604
           G LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF            
Sbjct: 68  GFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGA 127

Query: 605 TSLCFVYPLDFART 646
           TSLCFVYPLDFART
Sbjct: 128 TSLCFVYPLDFART 141



 Score =  123 bits (296), Expect = 2e-30
 Identities = 58/75 (77%), Positives = 67/75 (89%)
 Frame = +1

Query: 223 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 402
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 403 VRIPKEQGSPFILAW 447
           VRIPKEQG  F+  W
Sbjct: 61  VRIPKEQG--FLSYW 73



 Score = 96.3 bits (229), Expect = 3e-22
 Identities = 42/55 (76%), Positives = 49/55 (89%)
 Frame = +1

Query: 646 RLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYXXFGVSVQGIIIYRXSYFGF 810
           RLAADVGK  G+REF+GLGNC++KIFK+DG+ GLY  FGVSVQGIIIYR +YFGF
Sbjct: 142 RLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGF 196


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  124 bits (298), Expect = 1e-30
 Identities = 57/74 (77%), Positives = 58/74 (78%)
 Frame = +2

Query: 425 GLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXX 604
           G LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF            
Sbjct: 68  GFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGA 127

Query: 605 TSLCFVYPLDFART 646
           TSLCFVYPLDFART
Sbjct: 128 TSLCFVYPLDFART 141



 Score =  123 bits (296), Expect = 2e-30
 Identities = 58/75 (77%), Positives = 67/75 (89%)
 Frame = +1

Query: 223 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 402
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 403 VRIPKEQGSPFILAW 447
           VRIPKEQG  F+  W
Sbjct: 61  VRIPKEQG--FLSYW 73



 Score = 96.3 bits (229), Expect = 3e-22
 Identities = 42/55 (76%), Positives = 49/55 (89%)
 Frame = +1

Query: 646 RLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYXXFGVSVQGIIIYRXSYFGF 810
           RLAADVGK  G+REF+GLGNC++KIFK+DG+ GLY  FGVSVQGIIIYR +YFGF
Sbjct: 142 RLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGF 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,528
Number of Sequences: 438
Number of extensions: 4671
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)