Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_H21
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    53   4e-08
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    46   4e-06
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.011
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    32   0.078
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.1  

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 53.2 bits (122), Expect = 4e-08
 Identities = 22/39 (56%), Positives = 26/39 (66%)
 Frame = +3

Query: 156 GNACWELYCLEHGIQPDGQMPXKKPSGGXEKFXKTFFXQ 272
           GNACWELYCLEHGIQP+G M  +  S   +    TFF +
Sbjct: 17  GNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSE 55



 Score = 31.9 bits (69), Expect = 0.10
 Identities = 30/98 (30%), Positives = 37/98 (37%), Gaps = 1/98 (1%)
 Frame = +2

Query: 107 MRECISVHVGQAGVXI-R*CLLGALLPGARDPA*WPNAXXKTLRGXGKIFXNFFLXKTGX 283
           MRE IS+HVGQAG  I   C     L     P  + N    +    G  F  FF  +TG 
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGG-FSTFF-SETGQ 58

Query: 284 GXPXPRGXFXKFXTPXFFXGPPXGXKKXXFSPKXFFXG 397
           G   PR  +     P        G  +  F P+    G
Sbjct: 59  GKYVPRSIYVDL-EPNVIDQVRTGPYRDLFHPEQLITG 95


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = +3

Query: 156 GNACWELYCLEHGIQPDG 209
           GNACWELYCLEHGI PDG
Sbjct: 17  GNACWELYCLEHGIGPDG 34



 Score = 33.9 bits (74), Expect = 0.025
 Identities = 31/100 (31%), Positives = 38/100 (38%), Gaps = 3/100 (3%)
 Frame = +2

Query: 107 MRECISVHVGQAGVXI-R*CLLGALLPGARDPA*WPNAXXKTLRGXGKIFXNF--FLXKT 277
           MRE ISVHVGQAGV I   C     L     P  +P    +  +    +   F  F  +T
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 278 GXGXPXPRGXFXKFXTPXFFXGPPXGXKKXXFSPKXFFXG 397
           G G   PR  +     P        G  K  F P+    G
Sbjct: 61  GQGKFVPRSIYVDL-EPNVIDQVRTGPYKDLFHPEQMVTG 99


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.1 bits (77), Expect = 0.011
 Identities = 21/59 (35%), Positives = 21/59 (35%)
 Frame = +3

Query: 528 PPPPPGXXPPGXXPXXXXGXPPXXXXXKXXGGGXXPPPPXXFXXXXXXPXXXFXPPPPP 704
           PPPPP    P   P      PP        GG   PPPP         P     PPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPP----APIMGGPPPPPPPPGVAGAGPPP----PPPPPP 783



 Score = 29.5 bits (63), Expect = 0.55
 Identities = 20/59 (33%), Positives = 20/59 (33%)
 Frame = +1

Query: 529 PPPPRGXXPXGXXPXXXXGAPXXXXXKKXXGGGXXPPPPXFFXXXXXPPXXFXPPPPXP 705
           PPPP    P          AP          GG  PPPP        PP    PPPP P
Sbjct: 732 PPPP----PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP---PPPPPPP 783



 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/52 (28%), Positives = 15/52 (28%)
 Frame = +3

Query: 489 PXKXXPXXXXXXXPPPPPGXXPPGXXPXXXXGXPPXXXXXKXXGGGXXPPPP 644
           P    P       PPPPP   PPG         PP        G     P P
Sbjct: 748 PIPVPPPAPIMGGPPPPP--PPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +1

Query: 481 PXPPXXXXPXXXXPXXPPPPRGXXPXGXXP 570
           P P     P    P  PPPP G    G  P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 32.3 bits (70), Expect = 0.078
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +3

Query: 156 GNACWELYCLEHGIQPDGQMPXKKPSGGXEKFXKTFFXQ 272
           G+  W+  CLEHGI PDG +      G   K    FF Q
Sbjct: 18  GSQFWQQLCLEHGIGPDGTLESFATEGVDRK--DVFFYQ 54


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 528 PPPPPGXXPPGXXP 569
           PPPPPG  PP   P
Sbjct: 12  PPPPPGFEPPSQPP 25



 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 619 GGGXXPPPPXFFXXXXXPPXXFXPPPP 699
           G    PPPP  F     PP    PPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPP---PPPPP 30



 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 528 PPPPPGXXPPGXXPXXXXGXPP 593
           PPPPP   PPG  P      PP
Sbjct: 9   PPPPP--PPPGFEPPSQPPPPP 28


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = +3

Query: 480  PXXPXKXXPXXXXXXXPPPPPGXXPPGXXPXXXXGXPP 593
            P  P    P       PPPPP   PP          PP
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/62 (27%), Positives = 18/62 (29%)
 Frame = +1

Query: 520 PXXPPPPRGXXPXGXXPXXXXGAPXXXXXKKXXGGGXXPPPPXFFXXXXXPPXXFXPPPP 699
           P  PPP          P     AP     +     G  PPP         PP    PPP 
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPP---APPPA 394

Query: 700 XP 705
            P
Sbjct: 395 IP 396



 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/56 (26%), Positives = 15/56 (26%)
 Frame = +3

Query: 537 PPGXXPPGXXPXXXXGXPPXXXXXKXXGGGXXPPPPXXFXXXXXXPXXXFXPPPPP 704
           PP   PP   P      PP        G    PP P         P      PP P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,260,538
Number of Sequences: 5004
Number of extensions: 37149
Number of successful extensions: 121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)