Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_H16
(819 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 30 0.34
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace... 27 3.2
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 27 3.2
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc... 26 5.6
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 26 7.4
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 26 7.4
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 25 9.8
SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit L37|... 25 9.8
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 25 9.8
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 30.3 bits (65), Expect = 0.34
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 241 VRVHRANTGRSSNELDRQTTELERR 315
+R H+ + GR+ ELDR+ T+L++R
Sbjct: 18 LRAHQRSLGRAERELDRERTKLDQR 42
>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
N-acetylglucosaminyltransferase Alg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 165 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 67
Y ES + D+ + SH+ A +I Q R+G +
Sbjct: 63 YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 419 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDXVI 580
RA +++ + +KR DI + DNW ND+ C + G +H+ + ++
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIHSPTHVHNLV 638
>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -3
Query: 637 DRAVTSHAPDSNIPVYSFVNHXIHFVTIVHPRTELERASLHVVGP 503
D A H PDS V + N+ F + + + +HV+GP
Sbjct: 81 DIASFIHQPDSRTQVLALENNIKEFGLTYYGMNDRRQGIVHVIGP 125
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -3
Query: 310 VPTQSFVDPTHLKICLYSHGGL 245
+P Q+F TH+++C+Y GG+
Sbjct: 153 IPQQNF---THVRLCMYPDGGI 171
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 25.8 bits (54), Expect = 7.4
Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Frame = +2
Query: 290 DKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN---AAATTAGDYALRARVSNNGSVSWIK 460
+K+L+ + WL+S +R W + +++ A + L ++ + + + K
Sbjct: 415 EKKLAKRVKNYRLKDWLISRQRFWGTPIPMVHCETCGAVPVPESELPVKLPDLDKI-YEK 473
Query: 461 RLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDXVIDKRIYRY 601
++P+S L+ W TC G +D MD +D Y +
Sbjct: 474 G---TSPLS-NLETWMK--TTCPKCHGPATRETDTMDTFVDSSWYYF 514
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -3
Query: 244 GLTNVSMSQMQGQVDYDFGVGGGVPIV--RCEERVDHE 137
G ++ S+S ++ ++DY G+P+V + E VD E
Sbjct: 11 GKSDTSVSSLECEIDYHIEGSDGIPVVEPKISEFVDME 48
>SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit
L37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 25.4 bits (53), Expect = 9.8
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +2
Query: 425 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDXVIDK 586
R S N S S +KR +S+ +S + +D + K ++ H S + I K
Sbjct: 31 RSSRNSSSSLVKRSYVSSRVSPKKPQHNSDATSSAQKVANKTHTSSVLPGTILK 84
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 25.4 bits (53), Expect = 9.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMSWIDKRLSW 307
N ES S +++Q+D + S D R++W
Sbjct: 526 NESESNSLLKLQSDFKFSNSDDRVAW 551
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,851,943
Number of Sequences: 5004
Number of extensions: 56925
Number of successful extensions: 173
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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