Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_H15
(783 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 28 1.3
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.3
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 27 2.3
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 2.3
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 27 3.0
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 5.3
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 5.3
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 26 7.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.3
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 282 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNN 398
F+ W+ P+ S +L ++G PP + LS L ++ N
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSELVAAKLKN 298
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 451 PRRSNI*ASPSTVG*HSAPTSRRYAIVPPSS*DVSTR 561
P SN + ST H P+S+R +++PP++ ++ +R
Sbjct: 314 PSGSNQASLRSTSTIHYTPSSKRISVIPPNTSNIGSR 350
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +3
Query: 9 KSSSYETTCRTVRSDIESRERVPGPVTSQPESRKAPPSPRLLFSLYIN 152
KS YE T R V+ ++ + ++PE P P +++L+ N
Sbjct: 29 KSKEYEETPRKVKIVKRKKQPARKQIETRPEYEMEPEQPGQVYNLWYN 76
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 84 VTSQPESRKAPPSPRLLFSLYINDIPRSPETHLALFA 194
+ +QP+ K PSP F L+ + RS ET+L +A
Sbjct: 47 IDTQPKEEKPEPSPSSPFGLFAYVVKRS-ETYLIQYA 82
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 27.1 bits (57), Expect = 3.0
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +1
Query: 70 AFPAPSRHSRSPARLRPLPXYYSVCISTIYPGLRRPIWRSSPMTP-PSTTRVGRRRCFID 246
+ P PS S + L + S+ + R+P RS P+TP TR ++
Sbjct: 75 SLPTPSSDKSSTSPFPYLKGSFDDRFSSTHSLTRQPSPRS-PLTPLKGNTRASPEIRYVS 133
Query: 247 DFRPQLPPWDSGSGS 291
DF P P++ S
Sbjct: 134 DFTPPSSPFEDMQAS 148
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 512 DVGAECHPTVEGDA*IFDLRGPRYGLVVHRDWANG 408
DV A C +++ +DLR PR+ + DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 5.3
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = +3
Query: 159 PRSPETHLALFADDTAIYYSCRKKALLHRRL---QTAATTMGQWFRKWRIDINPTKSTAV 329
P++ + +LF+D++ + S +L ++ + F++ + ST +
Sbjct: 326 PQTQQNESSLFSDNSMVNSSSNSFSLFPNATLPNPPSSELLTTPFQQIKPPSQVFMSTGL 385
Query: 330 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRP 419
L K+ RP PLP + P+ VRP
Sbjct: 386 LSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 25.8 bits (54), Expect = 7.0
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +3
Query: 330 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMYDQPIP---WAPKVKYLGVTLDSRMTF 500
L ++ RP +L+ V+ AP++R ++ P W PK K G R
Sbjct: 408 LLEKLRPEMISLNADF-IGNVDRAAPSLRKAEAEEEKPPEEKWVPKAKARGKNSALRRYL 466
Query: 501 RPHIKTVRDR 530
R H + V D+
Sbjct: 467 RKHARNVVDQ 476
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 292 GASTLTPRKAQRCSSKGVALRTPR*ASLSRLGASITPPPP 411
GAS+ P R SS P AS++ +I PPP
Sbjct: 889 GASSAQPAAMSRTSSVSTLPPPPPTASMTASAPAIASPPP 928
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 9.3
Identities = 43/172 (25%), Positives = 64/172 (37%), Gaps = 7/172 (4%)
Frame = +1
Query: 49 PISSRGNAFPAP-SRHSRSPARLRPLPXYYSVCI-STIYP-----GLRRPIWRSSPMTPP 207
P S+ + P P + S + PLP + C ST P L PI + P T
Sbjct: 197 PTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTST 256
Query: 208 STTRVGRRRCFIDDFRPQLPPWDSGSGSGASTLTPRKAQRCSSKGVALRTPR*ASLSRLG 387
S+T + P + S S +T T S+ V P ++ S
Sbjct: 257 SSTSIPIPPTSTSSTDTNSSPLPTTSTS-CTTSTSIPPTGNSTTPVTPTVPPTSTSS--- 312
Query: 388 ASITPPPPFAQSRCTTSPYRGPRRSNI*ASPSTVG*HSAPTSRRYAIVPPSS 543
+ TPPPP + S TS P S + +++ T+ VPP+S
Sbjct: 313 -TSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTS 363
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,896
Number of Sequences: 5004
Number of extensions: 64129
Number of successful extensions: 220
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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