Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_H14
(790 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.11
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 31 0.19
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 29 0.76
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 28 1.3
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 28 1.8
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 27 2.3
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.1
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces... 27 3.1
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 4.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 4.0
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 7.1
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 26 7.1
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 26 7.1
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 25 9.4
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.9 bits (69), Expect = 0.11
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 2/119 (1%)
Frame = +1
Query: 277 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 456
T T S +T + +S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 457 VEGVNVLATPSSSRITIGGLALMHQATLPWRSRATSTRSSNPRFHTP--TTPDLTSISI 627
V +TP ++ ++ + +T P S + SS P TP TT TS S+
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTST-PVTSSNYTISSSTPVTSTPVTTTNCTTSTSV 597
Score = 31.1 bits (67), Expect = 0.19
Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 4/117 (3%)
Frame = +1
Query: 289 TKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 462
T +N T S+P S+ + +V + S P P+T C T+ +
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482
Query: 463 GVNVLATPSSSRITIGGLALMHQATLPWRSRATSTRSSNPRFHTP--TTPDLTSISI 627
V +TP ++ ++ + +T P S + SS P TP TT TS S+
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTST-PVTSSNYTISSSTPVTSTPVTTTNCTTSTSV 538
Score = 27.1 bits (57), Expect = 3.1
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = +1
Query: 403 SLKIPVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPWRSRATSTRSSNP 582
S +P T C T+ + G + L+TP + + + P + +T T SS
Sbjct: 219 SSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSS-- 276
Query: 583 RFHTPTTPDLTSISINP 633
T +T TS SI P
Sbjct: 277 PLPTTSTSCTTSTSIPP 293
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 31.1 bits (67), Expect = 0.19
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 4/126 (3%)
Frame = +1
Query: 277 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 447
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 448 DVTVEGVNVLATP-SSSRITIGGLALMHQATLPWRSRATSTRSSNPRFHTPTTPDLTSIS 624
DV+ E L+TP S +I G + +++ + ++ +S +S P T T+ + S++
Sbjct: 367 DVSDEEQRFLSTPLGSFDESILGSSPINRLSSSFKQYTSSLKS--PGLSTRTSSTMNSLN 424
Query: 625 INPLNA 642
+ A
Sbjct: 425 SSRFGA 430
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 29.1 bits (62), Expect = 0.76
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 562 STRSSNPRFHTPTTPDLTSISINPLNAVLKGVRAGG*SLRCHQRL 696
S R+ +P+F +P ++S + NP A L ++ L+ H L
Sbjct: 196 SNRNGDPKFRFSVSPWISSSNFNPYEASLANFQSDNCKLKSHNSL 240
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 4 WDDLFMEEIVPLXVSAASAIPSLVNAFSSSKPPQTD 111
W D+F + +P+ ++A IPSL A SK P T+
Sbjct: 239 WFDIF--DFIPMIFTSALLIPSLYPALERSKLPFTE 272
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 27.9 bits (59), Expect = 1.8
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +3
Query: 480 HPFILSHYYWRSRPYASSHPPLAISGYINPIIKSPIPYTNHPRLNIHFHQSPERRTKRSS 659
HPF+ ++ P+A+ P L + PI+ SP+ Y N LN P +
Sbjct: 233 HPFMQES---KTSPFATRRPSLNTDHHGRPILLSPLNYQN-SSLN------PSTPSPFGG 282
Query: 660 RRGLKPPLSSEAPSAYLXPLVT-GH 731
+ PP+S+ +P P+ + GH
Sbjct: 283 SPVMHPPVSNLSPRTPAVPMSSDGH 307
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 524 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 405
I A P +R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 259 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 372
R+Y L T ++S + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 356
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 585 IPYT--NHPRLNIHFHQSPERRTKRSSRRGLKPPLSSEAPSA 704
+PYT NHP+ +I FH E + KP ++S+A +A
Sbjct: 27 LPYTARNHPQFSIWFHNDFEPVKDLKALLKDKPQIASQAVTA 68
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +1
Query: 340 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 429
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +1
Query: 559 TSTRSSNPRFHTPTTPDLTSISINPLNAVLKGVRA 663
+ST N FH PT TS S A KGV +
Sbjct: 807 SSTNEYNTSFHAPTVSSTTSSSSTTSLAANKGVNS 841
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 509 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 375
P ++E + TL +T+T V + + +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 100 GVWKKRKH*PRREWPKRQKRXKAQF 26
G WKK + + EW K ++ KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 569 RVDVARDRQGRVA*CIRARPPIVMREDE 486
RVD R +A IR R P+ ++EDE
Sbjct: 472 RVDALRSSANSIASSIRRRHPVNIQEDE 499
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 25.4 bits (53), Expect = 9.4
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Frame = +1
Query: 406 LKIPVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPWRSRATSTRSS--- 576
L I ++ C A TPS+ + + TLP + A T +S
Sbjct: 19 LSITKSIKFCKLRALQVANPQRKAKTPSNHATEELQQSSTNSTTLPTQEAAVETNASASH 78
Query: 577 NPRFHTPTTPDLTSISINP 633
F PTT S+SI+P
Sbjct: 79 ETSFALPTTSPAASLSISP 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,067,653
Number of Sequences: 5004
Number of extensions: 61956
Number of successful extensions: 242
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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